Name: mm200803lca
Variants: 158809
Novel Variants: 3244 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 158809 11839 0|1 88986 0/1 5588 1|1 50580 1/1 1816 1/2
Total Gene-associated SNVs 158809 11839 0|1 88986 0/1 5588 1|1 50580 1/1 1816 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION143
CODON_CHANGE_PLUS_CODON_INSERTION90
CODON_DELETION55
CODON_INSERTION80
FRAME_SHIFT228
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST4
GENE_FUSION2
GENE_FUSION_REVERESE2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]26
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0058.1:Max]19
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]34
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]27
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]100
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]41
NON_SYNONYMOUS_CODING11655
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION239
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS283
SPLICE_SITE_REGION51
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING252
START_GAINED357
START_LOST17
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION2
STOP_GAINED110
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST26
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING12272
SYNONYMOUS_STOP14
TRANSCRIPT5
None0

Type Total Variants
1717
MISSENSE11943
NONSENSE112
SILENT12538
None0

Type Total Variants
HIGH735
LOW13118
MODERATE12266
MODIFIER191
None0

Type Total Variants
PASS158809

Quality Value
Min30.0
Average2897.68624542687
Max816243.69

Read Depth Value
Min0
Average57.74287981159758
Max8925

Type Total Variants
None0

Chromossome Total Variants
115692
106876
119493
128395
133047
145509
155182
166844
178711
182803
199567
211336
203757
212335
224063
38479
46803
56741
69955
78269
85641
96307
X2887
Y117