Name: mm200802avc
Variants: 159861
Novel Variants: 3390 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 159861 11856 0|1 89272 0/1 5956 1|1 51033 1/1 1744 1/2
Total Gene-associated SNVs 159861 11856 0|1 89272 0/1 5956 1|1 51033 1/1 1744 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION128
CODON_CHANGE_PLUS_CODON_INSERTION93
CODON_DELETION59
CODON_INSERTION67
FRAME_SHIFT244
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST5
GENE_FUSION_REVERESE2
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]28
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]14
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]32
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]27
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]112
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]16
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]35
NON_SYNONYMOUS_CODING11528
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION258
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS269
SPLICE_SITE_REGION40
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION3
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING259
START_GAINED333
START_LOST14
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED105
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12159
SYNONYMOUS_STOP13
TRANSCRIPT3
None0

Type Total Variants
1666
MISSENSE11831
NONSENSE110
SILENT12431
None0

Type Total Variants
HIGH734
LOW12968
MODERATE12138
MODIFIER198
None0

Type Total Variants
PASS159861

Quality Value
Min30.0
Average2938.1160762788
Max816243.69

Read Depth Value
Min0
Average67.24280468657146
Max9301

Type Total Variants
None0

Chromossome Total Variants
115006
106621
119564
128416
133192
145425
155413
166643
179008
182729
1910134
211592
204089
212474
224084
38593
46571
57230
69610
78355
85372
96533
X3103
Y104