Name: mm200801fps
Variants: 147318
Novel Variants: 3169 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 147318 10659 0|1 77113 0/1 5933 1|1 52181 1/1 1432 1/2
Total Gene-associated SNVs 147318 10659 0|1 77113 0/1 5933 1|1 52181 1/1 1432 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION122
CODON_CHANGE_PLUS_CODON_INSERTION91
CODON_DELETION57
CODON_INSERTION63
FRAME_SHIFT232
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED7
MOTIF[MA0003.1:Ap2alpha]30
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]25
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]24
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]12
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]103
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]16
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]5
MOTIF[MA0162.1:Egr1]37
NON_SYNONYMOUS_CODING11227
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION260
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS259
SPLICE_SITE_REGION38
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING244
START_GAINED337
START_LOST10
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED105
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11603
SYNONYMOUS_STOP13
TRANSCRIPT5
None0

Type Total Variants
1614
MISSENSE11528
NONSENSE107
SILENT11860
None0

Type Total Variants
HIGH699
LOW12402
MODERATE11824
MODIFIER184
None0

Type Total Variants
PASS147318

Quality Value
Min30.06
Average3070.41319051315
Max816243.69

Read Depth Value
Min0
Average59.63394154142739
Max8604

Type Total Variants
None0

Chromossome Total Variants
114588
106417
118563
127921
132927
144996
154951
166588
178026
182579
199700
210190
203822
212279
223629
37801
46144
56175
68871
77291
85190
96078
X2482
Y110