Name: 2388_2
Variants: 39426
Novel Variants: 24439 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
8 | |
CODON_CHANGE_PLUS_CODON_DELETION | 9 |
CODON_CHANGE_PLUS_CODON_INSERTION | 5 |
CODON_DELETION | 5 |
CODON_INSERTION | 6 |
FRAME_SHIFT | 105 |
FRAME_SHIFT+SPLICE_SITE_REGION | 11 |
FRAME_SHIFT+START_LOST | 2 |
FRAME_SHIFT+STOP_GAINED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 11 |
MOTIF[MA0014.1:Pax5] | 4 |
MOTIF[MA0024.1:E2F1] | 5 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0058.1:Max] | 7 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.1:Gabp] | 11 |
MOTIF[MA0062.2:Gabp] | 20 |
MOTIF[MA0079.1:SP1] | 3 |
MOTIF[MA0079.2:SP1] | 13 |
MOTIF[MA0080.1:PU1] | 2 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 3 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 7 |
MOTIF[MA0138.1:Nrsf] | 1 |
MOTIF[MA0138.2:Nrsf] | 5 |
MOTIF[MA0139.1:CTCF] | 22 |
MOTIF[MA0147.1:Cmyc] | 9 |
MOTIF[MA0154.1:EBF] | 2 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 15 |
NON_SYNONYMOUS_CODING | 9555 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 229 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 6 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 231 |
RARE_AMINO_ACID | 1 |
SPLICE_SITE_REGION | 28 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 92 |
START_GAINED | 335 |
START_LOST | 10 |
STOP_GAINED | 741 |
STOP_GAINED+SPLICE_SITE_REGION | 26 |
STOP_LOST | 8 |
SYNONYMOUS_CODING | 4457 |
SYNONYMOUS_STOP | 1 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
DRAGENIndelHardQUAL | 321 |
DRAGENIndelHardQUAL;LowDepth | 534 |
DRAGENSnpHardQUAL | 13535 |
DRAGENSnpHardQUAL;LowDepth | 8148 |
DRAGENSnpHardQUAL;LowDepth;PloidyConflict | 2 |
DRAGENSnpHardQUAL;PloidyConflict | 1 |
lod_fstar | 5 |
LowDepth | 7308 |
LowDepth;PloidyConflict | 5 |
PASS | 9566 |
PloidyConflict | 1 |
Quality | Value |
---|---|
Min | 0.0 |
Average | 10.0159678892101 |
Max | 65.19 |
Read Depth | Value |
---|---|
Min | 1 |
Average | 1.3112920407852686 |
Max | 9 |
Type | Total Variants |
---|---|
None | 0 |