Name: 2388_2
Variants: 39426
Novel Variants: 24439 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 39426 400 0|1 8592 0/1 46 1|0 1174 1|1 29181 1/1 33 1/2
Total Gene-associated SNVs 39426 400 0|1 8592 0/1 46 1|0 1174 1|1 29181 1/1 33 1/2

Type Total Variants
8
CODON_CHANGE_PLUS_CODON_DELETION9
CODON_CHANGE_PLUS_CODON_INSERTION5
CODON_DELETION5
CODON_INSERTION6
FRAME_SHIFT105
FRAME_SHIFT+SPLICE_SITE_REGION11
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED1
MOTIF[MA0003.1:Ap2alpha]11
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0024.1:E2F1]5
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]11
MOTIF[MA0062.2:Gabp]20
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]13
MOTIF[MA0080.1:PU1]2
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]22
MOTIF[MA0147.1:Cmyc]9
MOTIF[MA0154.1:EBF]2
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]15
NON_SYNONYMOUS_CODING9555
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION229
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS231
RARE_AMINO_ACID1
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+SYNONYMOUS_CODING92
START_GAINED335
START_LOST10
STOP_GAINED741
STOP_GAINED+SPLICE_SITE_REGION26
STOP_LOST8
SYNONYMOUS_CODING4457
SYNONYMOUS_STOP1
TRANSCRIPT1
None0

Type Total Variants
901
MISSENSE9802
NONSENSE767
SILENT4550
None0

Type Total Variants
HIGH1142
LOW4986
MODERATE9809
MODIFIER83
None0

Type Total Variants
DRAGENIndelHardQUAL321
DRAGENIndelHardQUAL;LowDepth534
DRAGENSnpHardQUAL13535
DRAGENSnpHardQUAL;LowDepth8148
DRAGENSnpHardQUAL;LowDepth;PloidyConflict2
DRAGENSnpHardQUAL;PloidyConflict1
lod_fstar5
LowDepth7308
LowDepth;PloidyConflict5
PASS9566
PloidyConflict1

Quality Value
Min0.0
Average10.0159678892103
Max65.19

Read Depth Value
Min1
Average1.3112920407852686
Max9

Type Total Variants
None0

Chromossome Total Variants
13894
101586
112451
122026
13692
141114
151227
161974
172607
18622
192831
22529
201113
21553
221119
32107
41356
51592
61840
71892
81457
91651
M8
X1176
Y9