Name: 2388
Variants: 369412
Novel Variants: 121963 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 42 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 97 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 72 |
| CODON_DELETION | 43 |
| CODON_INSERTION | 44 |
| FRAME_SHIFT | 176 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 38 |
| FRAME_SHIFT+START_LOST | 6 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_LOST | 5 |
| GENE_FUSION_REVERESE | 2 |
| MOTIF_DELETED | 4 |
| MOTIF[MA0003.1:Ap2alpha] | 54 |
| MOTIF[MA0005.1:MEF2C] | 1 |
| MOTIF[MA0014.1:Pax5] | 16 |
| MOTIF[MA0016.1:RXRA] | 3 |
| MOTIF[MA0024.1:E2F1] | 17 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 3 |
| MOTIF[MA0047.1:FOXA2] | 2 |
| MOTIF[MA0047.2:FOXA2] | 7 |
| MOTIF[MA0058.1:Max] | 31 |
| MOTIF[MA0059.1:Cmyc] | 13 |
| MOTIF[MA0062.1:Gabp] | 19 |
| MOTIF[MA0062.2:Gabp] | 53 |
| MOTIF[MA0065.1:PPARG] | 5 |
| MOTIF[MA0065.2:PPARG] | 3 |
| MOTIF[MA0074.1:RXRA] | 2 |
| MOTIF[MA0079.1:SP1] | 19 |
| MOTIF[MA0079.2:SP1] | 58 |
| MOTIF[MA0080.1:PU1] | 7 |
| MOTIF[MA0080.2:PU1] | 9 |
| MOTIF[MA0083.1:Srf] | 6 |
| MOTIF[MA0093.1:USF1] | 18 |
| MOTIF[MA0095.1:Yy1] | 21 |
| MOTIF[MA0099.1:Cfos] | 8 |
| MOTIF[MA0099.2:AP1] | 14 |
| MOTIF[MA0105.1:NFKB] | 1 |
| MOTIF[MA0114.1:HNF4A] | 23 |
| MOTIF[MA0115.1:RNR1H2] | 3 |
| MOTIF[MA0138.1:Nrsf] | 6 |
| MOTIF[MA0138.2:Nrsf] | 21 |
| MOTIF[MA0139.1:CTCF] | 269 |
| MOTIF[MA0140.1:Tal1] | 1 |
| MOTIF[MA0147.1:Cmyc] | 24 |
| MOTIF[MA0148.1:FOXA1] | 2 |
| MOTIF[MA0154.1:EBF] | 7 |
| MOTIF[MA0159.1:RXR] | 4 |
| MOTIF[MA0162.1:Egr1] | 106 |
| MOTIF[MA0239.1:Pax5] | 1 |
| NON_SYNONYMOUS_CODING | 10865 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 267 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 7 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 265 |
| RARE_AMINO_ACID | 1 |
| SPLICE_SITE_REGION | 96 |
| SPLICE_SITE_REGION+CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 226 |
| START_GAINED | 528 |
| START_LOST | 15 |
| STOP_GAINED | 207 |
| STOP_GAINED+SPLICE_SITE_REGION | 14 |
| STOP_LOST | 25 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 10987 |
| SYNONYMOUS_STOP | 8 |
| TRANSCRIPT | 4 |
| None | 0 |
| Type | Total Variants |
|---|---|
| DRAGENIndelHardQUAL | 3091 |
| DRAGENIndelHardQUAL;LowDepth | 3461 |
| DRAGENIndelHardQUAL;LowDepth;PloidyConflict | 4 |
| DRAGENSnpHardQUAL | 55032 |
| DRAGENSnpHardQUAL;LowDepth | 85214 |
| DRAGENSnpHardQUAL;LowDepth;PloidyConflict | 74 |
| DRAGENSnpHardQUAL;PloidyConflict | 25 |
| LowDepth | 69841 |
| LowDepth;PloidyConflict | 51 |
| PASS | 152532 |
| PloidyConflict | 87 |
| Quality | Value |
|---|---|
| Min | 0.0 |
| Average | 24.6172009571831 |
| Max | 831.41 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 5.311670979827402 |
| Max | 416 |
| Type | Total Variants |
|---|---|
| None | 0 |