Name: tsonexp104
Variants: 11588
Novel Variants: 278 (Not in latest DbSNP Build)
| Type | Total Variants | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total SNVs | 11588 | 6 0 | 1 0/0/0/0/1 | 1 0/0/0/1/2 | 12 0/0/1 | 4 0/0/1/2 | 1 0/0/1/2/3 | 6874 0/1 | 2 0/1/2 | 90 1 | 4583 1/1 | 14 1/2 |
| Total Gene-associated SNVs | 11588 | 6 0 | 1 0/0/0/0/1 | 1 0/0/0/1/2 | 12 0/0/1 | 4 0/0/1/2 | 1 0/0/1/2/3 | 6874 0/1 | 2 0/1/2 | 90 1 | 4583 1/1 | 14 1/2 |
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 46 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 33 |
| CODON_DELETION | 15 |
| CODON_INSERTION | 25 |
| FRAME_SHIFT | 31 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 11 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 1 |
| FRAME_SHIFT+STOP_LOST | 2 |
| MOTIF[MA0024.1:E2F1] | 1 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.2:SP1] | 1 |
| MOTIF[MA0139.1:CTCF] | 4 |
| NON_SYNONYMOUS_CODING | 3719 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 72 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 136 |
| SPLICE_SITE_REGION | 4 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 104 |
| START_GAINED | 17 |
| START_LOST | 5 |
| STOP_GAINED | 18 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 12 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 4607 |
| SYNONYMOUS_CODING+CODON_INSERTION | 1 |
| SYNONYMOUS_STOP | 3 |
| None | 0 |
| Type | Total Variants |
|---|---|
| . | 11588 |
| Quality | Value |
|---|---|
| Min | 0.0 |
| Average | 172.061276320332 |
| Max | 200.0 |
| Read Depth | Value |
|---|---|
| Min | 3 |
| Average | 91.39644459785985 |
| Max | 3609 |
| Type | Total Variants |
|---|---|
| None | 0 |