Name: 002-64854-300-scex
Variants: 101956
Novel Variants: 12663 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 30 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 107 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 188 |
| CODON_DELETION | 133 |
| CODON_INSERTION | 247 |
| FRAME_SHIFT | 201 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 65 |
| FRAME_SHIFT+START_LOST | 3 |
| FRAME_SHIFT+STOP_GAINED | 3 |
| FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 2 |
| FRAME_SHIFT+STOP_LOST | 9 |
| GENE_FUSION | 2 |
| MOTIF_DELETED | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 28 |
| MOTIF[MA0014.1:Pax5] | 4 |
| MOTIF[MA0016.1:RXRA] | 2 |
| MOTIF[MA0024.1:E2F1] | 6 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 1 |
| MOTIF[MA0058.1:Max] | 11 |
| MOTIF[MA0059.1:Cmyc] | 5 |
| MOTIF[MA0062.1:Gabp] | 3 |
| MOTIF[MA0062.2:Gabp] | 22 |
| MOTIF[MA0065.1:PPARG] | 1 |
| MOTIF[MA0079.1:SP1] | 3 |
| MOTIF[MA0079.2:SP1] | 15 |
| MOTIF[MA0080.1:PU1] | 2 |
| MOTIF[MA0080.2:PU1] | 3 |
| MOTIF[MA0093.1:USF1] | 4 |
| MOTIF[MA0095.1:Yy1] | 10 |
| MOTIF[MA0099.1:Cfos] | 1 |
| MOTIF[MA0099.2:AP1] | 1 |
| MOTIF[MA0114.1:HNF4A] | 4 |
| MOTIF[MA0138.2:Nrsf] | 4 |
| MOTIF[MA0139.1:CTCF] | 71 |
| MOTIF[MA0147.1:Cmyc] | 5 |
| MOTIF[MA0148.1:FOXA1] | 1 |
| MOTIF[MA0162.1:Egr1] | 19 |
| NON_SYNONYMOUS_CODING | 10778 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 230 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 271 |
| SPLICE_SITE_REGION | 37 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_DELETION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 248 |
| START_GAINED | 240 |
| START_LOST | 9 |
| START_LOST+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 5 |
| START_LOST+CODON_DELETION | 1 |
| STOP_GAINED | 100 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 2 |
| STOP_GAINED+CODON_INSERTION | 7 |
| STOP_GAINED+SPLICE_SITE_REGION | 3 |
| STOP_LOST | 21 |
| STOP_LOST+CODON_DELETION | 3 |
| STOP_LOST+SPLICE_SITE_REGION | 1 |
| SYNONYMOUS_CODING | 11384 |
| SYNONYMOUS_STOP | 9 |
| TRANSCRIPT | 2 |
| None | 0 |
| Type | Total Variants |
|---|---|
| . | 101956 |
| Quality | Value |
|---|---|
| Min | 3.01044 |
| Average | 171.443177136706 |
| Max | 228.0 |
| Read Depth | Value |
|---|---|
| Min | 1 |
| Average | 47.502638393032285 |
| Max | 526 |
| Type | Total Variants |
|---|---|
| None | 0 |