Name: mm200520lff
Variants: 140761
Novel Variants: 2427 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 135 |
CODON_CHANGE_PLUS_CODON_INSERTION | 84 |
CODON_DELETION | 49 |
CODON_INSERTION | 75 |
FRAME_SHIFT | 224 |
FRAME_SHIFT+SPLICE_SITE_REGION | 41 |
FRAME_SHIFT+START_LOST | 4 |
FRAME_SHIFT+STOP_GAINED | 5 |
FRAME_SHIFT+STOP_LOST | 4 |
GENE_FUSION | 1 |
GENE_FUSION_REVERESE | 1 |
MOTIF_DELETED | 14 |
MOTIF[MA0003.1:Ap2alpha] | 28 |
MOTIF[MA0014.1:Pax5] | 6 |
MOTIF[MA0016.1:RXRA] | 5 |
MOTIF[MA0024.1:E2F1] | 9 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0058.1:Max] | 18 |
MOTIF[MA0059.1:Cmyc] | 4 |
MOTIF[MA0062.1:Gabp] | 6 |
MOTIF[MA0062.2:Gabp] | 28 |
MOTIF[MA0079.1:SP1] | 9 |
MOTIF[MA0079.2:SP1] | 17 |
MOTIF[MA0080.2:PU1] | 4 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0093.1:USF1] | 5 |
MOTIF[MA0095.1:Yy1] | 8 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0099.2:AP1] | 2 |
MOTIF[MA0114.1:HNF4A] | 11 |
MOTIF[MA0138.1:Nrsf] | 1 |
MOTIF[MA0138.2:Nrsf] | 6 |
MOTIF[MA0139.1:CTCF] | 97 |
MOTIF[MA0140.1:Tal1] | 1 |
MOTIF[MA0147.1:Cmyc] | 17 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 4 |
MOTIF[MA0162.1:Egr1] | 42 |
NON_SYNONYMOUS_CODING | 11097 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 239 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 5 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 260 |
SPLICE_SITE_REGION | 41 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 235 |
START_GAINED | 335 |
START_LOST | 15 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 109 |
STOP_GAINED+SPLICE_SITE_REGION | 2 |
STOP_LOST | 25 |
STOP_LOST+SPLICE_SITE_REGION | 4 |
SYNONYMOUS_CODING | 11574 |
SYNONYMOUS_STOP | 12 |
TRANSCRIPT | 4 |
None | 0 |
Type | Total Variants |
---|---|
PASS | 140761 |
Quality | Value |
---|---|
Min | 30.01 |
Average | 3280.12796392428 |
Max | 539727.28 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 51.13101640369136 |
Max | 5255 |
Type | Total Variants |
---|---|
None | 0 |