Name: mm200520lff
Variants: 140761
Novel Variants: 2427 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 140761 10423 0|1 72577 0/1 5472 1|1 51139 1/1 1150 1/2
Total Gene-associated SNVs 140761 10423 0|1 72577 0/1 5472 1|1 51139 1/1 1150 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION135
CODON_CHANGE_PLUS_CODON_INSERTION84
CODON_DELETION49
CODON_INSERTION75
FRAME_SHIFT224
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED14
MOTIF[MA0003.1:Ap2alpha]28
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]9
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]28
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]17
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]97
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]17
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]42
NON_SYNONYMOUS_CODING11097
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION239
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS260
SPLICE_SITE_REGION41
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING235
START_GAINED335
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED109
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST25
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11574
SYNONYMOUS_STOP12
TRANSCRIPT4
None0

Type Total Variants
1619
MISSENSE11380
NONSENSE111
SILENT11821
None0

Type Total Variants
HIGH701
LOW12360
MODERATE11682
MODIFIER188
None0

Type Total Variants
PASS140761

Quality Value
Min30.01
Average3280.12796392412
Max539727.28

Read Depth Value
Min0
Average51.13101640369136
Max5255

Type Total Variants
None0

Chromossome Total Variants
113591
106477
118365
127601
132634
144885
154804
166140
177849
182453
199669
29770
203490
212187
223360
37304
45758
56070
68496
76791
84809
95629
X2509
Y120