Name: mm200519jpm
Variants: 152269
Novel Variants: 2709 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 152269 11558 0|1 83239 0/1 5308 1|1 50781 1/1 1383 1/2
Total Gene-associated SNVs 152269 11558 0|1 83239 0/1 5308 1|1 50781 1/1 1383 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION120
CODON_CHANGE_PLUS_CODON_INSERTION88
CODON_DELETION55
CODON_INSERTION76
FRAME_SHIFT215
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
MOTIF_DELETED6
MOTIF[MA0003.1:Ap2alpha]33
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]19
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]24
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]6
MOTIF[MA0079.2:SP1]15
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]10
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]98
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]17
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]5
MOTIF[MA0162.1:Egr1]39
NON_SYNONYMOUS_CODING11659
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION241
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS291
SPLICE_SITE_REGION41
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING264
START_GAINED343
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
START_LOST+SPLICE_SITE_REGION1
STOP_GAINED114
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST30
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12138
SYNONYMOUS_STOP12
TRANSCRIPT3
None0

Type Total Variants
1636
MISSENSE11950
NONSENSE116
SILENT12414
None0

Type Total Variants
HIGH735
LOW12965
MODERATE12241
MODIFIER175
None0

Type Total Variants
PASS152269

Quality Value
Min30.01
Average3129.80704890654
Max539727.28

Read Depth Value
Min0
Average56.5084225942247
Max7657

Type Total Variants
None0

Chromossome Total Variants
114605
106591
118959
128175
132834
145283
155270
166291
178373
182585
199692
211460
203981
212166
223579
38567
46342
56603
69350
77694
85353
96523
X1874
Y119