Name: p545-full_variant_table
Variants: 26215
Novel Variants: 1031 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 26215 15552 0/1 10663 1/1
Total Gene-associated SNVs 26215 15552 0/1 10663 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION72
CODON_CHANGE_PLUS_CODON_INSERTION31
CODON_DELETION33
CODON_INSERTION27
FRAME_SHIFT34
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_LOST2
GENE_FUSION1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0058.1:Max]4
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]5
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]6
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]13
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING2383
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION61
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS119
SPLICE_SITE_REGION7
SPLICE_SITE_REGION+SYNONYMOUS_CODING58
START_GAINED61
START_LOST3
STOP_GAINED18
STOP_LOST8
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING3212
SYNONYMOUS_STOP1
None0

Type Total Variants
459
MISSENSE2456
NONSENSE18
SILENT3271
None0

Type Total Variants
HIGH197
LOW3368
MODERATE2607
MODIFIER32
None0

Type Total Variants
homopolymer_region7
homopolymer_region;off_target39
low_coverage167
low_coverage;homopolymer_region;off_target3
low_coverage;low_variant_fraction;off_target3
low_coverage;off_target5496
low_variant_fraction297
low_variant_fraction;off_target127
off_target13862
PASS6214

Quality Value
Min101.0
Average841.627884798779
Max10000.0

Read Depth Value
Min7
Average51.282853328247185
Max663

Type Total Variants
None0

Chromossome Total Variants
12428
101116
111623
121519
13594
14695
15896
161221
171588
18508
191409
22094
20487
21434
22486
31419
41117
51302
61227
71247
81015
91150
X640