Name: pa883-full_variant_table
Variants: 28875
Novel Variants: 1217 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 81 |
CODON_CHANGE_PLUS_CODON_INSERTION | 30 |
CODON_DELETION | 28 |
CODON_INSERTION | 24 |
FRAME_SHIFT | 30 |
FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
FRAME_SHIFT+STOP_GAINED | 1 |
FRAME_SHIFT+STOP_LOST | 2 |
GENE_FUSION | 3 |
MOTIF_DELETED | 3 |
MOTIF[MA0003.1:Ap2alpha] | 6 |
MOTIF[MA0014.1:Pax5] | 1 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 3 |
MOTIF[MA0058.1:Max] | 5 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.2:Gabp] | 4 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 4 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 1 |
MOTIF[MA0099.1:Cfos] | 1 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 2 |
MOTIF[MA0139.1:CTCF] | 16 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0162.1:Egr1] | 6 |
NON_SYNONYMOUS_CODING | 2558 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 59 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 3 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 101 |
SPLICE_SITE_REGION | 5 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 64 |
START_GAINED | 57 |
START_LOST | 3 |
STOP_GAINED | 17 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_LOST | 6 |
STOP_LOST+SPLICE_SITE_REGION | 1 |
SYNONYMOUS_CODING | 3336 |
SYNONYMOUS_STOP | 2 |
None | 0 |
Type | Total Variants |
---|---|
homopolymer_region | 6 |
homopolymer_region;off_target | 64 |
low_coverage | 121 |
low_coverage;homopolymer_region;off_target | 1 |
low_coverage;low_variant_fraction;off_target | 3 |
low_coverage;off_target | 5291 |
low_variant_fraction | 457 |
low_variant_fraction;off_target | 197 |
off_target | 16326 |
PASS | 6409 |
Quality | Value |
---|---|
Min | 101.0 |
Average | 1060.08155844156 |
Max | 10000.0 |
Read Depth | Value |
---|---|
Min | 7 |
Average | 61.167376623376626 |
Max | 1331 |
Type | Total Variants |
---|---|
None | 0 |