Name: pa883-full_variant_table
Variants: 28875
Novel Variants: 1217 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 28875 17552 0/1 11323 1/1
Total Gene-associated SNVs 28875 17552 0/1 11323 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION81
CODON_CHANGE_PLUS_CODON_INSERTION30
CODON_DELETION28
CODON_INSERTION24
FRAME_SHIFT30
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_LOST2
GENE_FUSION3
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]4
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0139.1:CTCF]16
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]6
NON_SYNONYMOUS_CODING2558
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION59
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS101
SPLICE_SITE_REGION5
SPLICE_SITE_REGION+SYNONYMOUS_CODING64
START_GAINED57
START_LOST3
STOP_GAINED17
STOP_GAINED+CODON_INSERTION1
STOP_LOST6
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING3336
SYNONYMOUS_STOP2
None0

Type Total Variants
435
MISSENSE2627
NONSENSE17
SILENT3402
None0

Type Total Variants
HIGH176
LOW3497
MODERATE2780
MODIFIER28
None0

Type Total Variants
homopolymer_region6
homopolymer_region;off_target64
low_coverage121
low_coverage;homopolymer_region;off_target1
low_coverage;low_variant_fraction;off_target3
low_coverage;off_target5291
low_variant_fraction457
low_variant_fraction;off_target197
off_target16326
PASS6409

Quality Value
Min101.0
Average1060.08155844156
Max10000.0

Read Depth Value
Min7
Average61.167376623376626
Max1331

Type Total Variants
None0

Chromossome Total Variants
12728
101274
112069
121541
13656
14758
15983
161300
171670
18518
191454
22432
20468
21455
22579
31517
41276
51354
61414
71500
81116
91391
X419
Y3