Name: p767-full_variant_table
Variants: 24419
Novel Variants: 974 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 83 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 32 |
| CODON_DELETION | 30 |
| CODON_INSERTION | 24 |
| FRAME_SHIFT | 24 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 1 |
| FRAME_SHIFT+STOP_LOST | 1 |
| GENE_FUSION | 2 |
| MOTIF_DELETED | 2 |
| MOTIF[MA0003.1:Ap2alpha] | 8 |
| MOTIF[MA0014.1:Pax5] | 3 |
| MOTIF[MA0016.1:RXRA] | 1 |
| MOTIF[MA0024.1:E2F1] | 2 |
| MOTIF[MA0047.2:FOXA2] | 1 |
| MOTIF[MA0058.1:Max] | 6 |
| MOTIF[MA0059.1:Cmyc] | 1 |
| MOTIF[MA0062.2:Gabp] | 5 |
| MOTIF[MA0079.1:SP1] | 2 |
| MOTIF[MA0079.2:SP1] | 7 |
| MOTIF[MA0093.1:USF1] | 1 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 16 |
| MOTIF[MA0154.1:EBF] | 1 |
| MOTIF[MA0162.1:Egr1] | 5 |
| NON_SYNONYMOUS_CODING | 2444 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 53 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 109 |
| SPLICE_SITE_REGION | 7 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 66 |
| START_GAINED | 64 |
| START_LOST | 2 |
| STOP_GAINED | 20 |
| STOP_LOST | 6 |
| SYNONYMOUS_CODING | 3278 |
| SYNONYMOUS_STOP | 3 |
| None | 0 |
| Type | Total Variants |
|---|---|
| homopolymer_region | 9 |
| homopolymer_region;off_target | 49 |
| low_coverage | 151 |
| low_coverage;low_variant_fraction;off_target | 3 |
| low_coverage;off_target | 4533 |
| low_variant_fraction | 281 |
| low_variant_fraction;off_target | 158 |
| off_target | 12846 |
| PASS | 6389 |
| Quality | Value |
|---|---|
| Min | 101.0 |
| Average | 869.423031246161 |
| Max | 10000.0 |
| Read Depth | Value |
|---|---|
| Min | 6 |
| Average | 55.17867234530488 |
| Max | 852 |
| Type | Total Variants |
|---|---|
| None | 0 |