Name: le-full_variant_table
Variants: 31631
Novel Variants: 1581 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 31631 19865 0/1 11766 1/1
Total Gene-associated SNVs 31631 19865 0/1 11766 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION153
CODON_CHANGE_PLUS_CODON_INSERTION33
CODON_DELETION52
CODON_INSERTION32
FRAME_SHIFT33
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
GENE_FUSION3
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]4
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]6
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]5
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]7
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]26
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING2581
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION61
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS123
SPLICE_SITE_REGION3
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING66
START_GAINED68
START_LOST1
STOP_GAINED19
STOP_LOST8
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING3353
SYNONYMOUS_STOP2
None0

Type Total Variants
596
MISSENSE2652
NONSENSE19
SILENT3421
None0

Type Total Variants
HIGH202
LOW3526
MODERATE2913
MODIFIER47
None0

Type Total Variants
homopolymer_region19
homopolymer_region;off_target118
low_coverage24
low_coverage;homopolymer_region;off_target2
low_coverage;low_variant_fraction;off_target6
low_coverage;off_target3936
low_variant_fraction557
low_variant_fraction;off_target550
off_target19765
PASS6654

Quality Value
Min101.0
Average2043.43811450792
Max10000.0

Read Depth Value
Min7
Average97.80639246309
Max1505

Type Total Variants
None0

Chromossome Total Variants
12776
101484
111824
121755
13768
14882
151073
161404
171762
18567
191692
22744
20601
21599
22675
31752
41444
51463
61445
71545
81094
91474
X808