Name: il-full_variant_table
Variants: 29758
Novel Variants: 1427 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 29758 18341 0/1 11417 1/1
Total Gene-associated SNVs 29758 18341 0/1 11417 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION130
CODON_CHANGE_PLUS_CODON_INSERTION28
CODON_DELETION50
CODON_INSERTION31
FRAME_SHIFT30
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST1
GENE_FUSION2
MOTIF[MA0003.1:Ap2alpha]6
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0058.1:Max]9
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]4
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]8
MOTIF[MA0083.1:Srf]1
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]15
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING2591
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION61
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS114
SPLICE_SITE_REGION5
SPLICE_SITE_REGION+SYNONYMOUS_CODING70
START_GAINED59
START_LOST2
STOP_GAINED12
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST6
SYNONYMOUS_CODING3366
SYNONYMOUS_STOP3
None0

Type Total Variants
531
MISSENSE2660
NONSENSE13
SILENT3439
None0

Type Total Variants
HIGH179
LOW3538
MODERATE2891
MODIFIER35
None0

Type Total Variants
homopolymer_region14
homopolymer_region;off_target98
low_coverage36
low_coverage;homopolymer_region;off_target2
low_coverage;low_variant_fraction;off_target2
low_coverage;off_target4104
low_variant_fraction490
low_variant_fraction;off_target432
off_target17928
PASS6652

Quality Value
Min101.0
Average1694.19120908663
Max10000.0

Read Depth Value
Min6
Average82.44018415216077
Max1389

Type Total Variants
None0

Chromossome Total Variants
12617
101279
111773
121606
13667
14781
151019
161374
171699
18582
191618
22543
20542
21536
22628
31585
41418
51415
61408
71433
81109
91390
X736