Name: il-full_variant_table
Variants: 29758
Novel Variants: 1427 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 130 |
CODON_CHANGE_PLUS_CODON_INSERTION | 28 |
CODON_DELETION | 50 |
CODON_INSERTION | 31 |
FRAME_SHIFT | 30 |
FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 1 |
GENE_FUSION | 2 |
MOTIF[MA0003.1:Ap2alpha] | 6 |
MOTIF[MA0014.1:Pax5] | 2 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 2 |
MOTIF[MA0058.1:Max] | 9 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.2:Gabp] | 4 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 8 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0095.1:Yy1] | 2 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0138.2:Nrsf] | 3 |
MOTIF[MA0139.1:CTCF] | 15 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0162.1:Egr1] | 11 |
NON_SYNONYMOUS_CODING | 2591 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 61 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 114 |
SPLICE_SITE_REGION | 5 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 70 |
START_GAINED | 59 |
START_LOST | 2 |
STOP_GAINED | 12 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 6 |
SYNONYMOUS_CODING | 3366 |
SYNONYMOUS_STOP | 3 |
None | 0 |
Type | Total Variants |
---|---|
homopolymer_region | 14 |
homopolymer_region;off_target | 98 |
low_coverage | 36 |
low_coverage;homopolymer_region;off_target | 2 |
low_coverage;low_variant_fraction;off_target | 2 |
low_coverage;off_target | 4104 |
low_variant_fraction | 490 |
low_variant_fraction;off_target | 432 |
off_target | 17928 |
PASS | 6652 |
Quality | Value |
---|---|
Min | 101.0 |
Average | 1694.19120908663 |
Max | 10000.0 |
Read Depth | Value |
---|---|
Min | 6 |
Average | 82.44018415216077 |
Max | 1389 |
Type | Total Variants |
---|---|
None | 0 |