Name: df-full_variant_table
Variants: 20017
Novel Variants: 763 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 75 |
CODON_CHANGE_PLUS_CODON_INSERTION | 22 |
CODON_DELETION | 27 |
CODON_INSERTION | 15 |
FRAME_SHIFT | 23 |
FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
FRAME_SHIFT+STOP_GAINED | 2 |
FRAME_SHIFT+STOP_LOST | 1 |
GENE_FUSION | 1 |
MOTIF[MA0003.1:Ap2alpha] | 4 |
MOTIF[MA0024.1:E2F1] | 2 |
MOTIF[MA0058.1:Max] | 3 |
MOTIF[MA0062.2:Gabp] | 3 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 1 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 1 |
MOTIF[MA0139.1:CTCF] | 11 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0162.1:Egr1] | 8 |
NON_SYNONYMOUS_CODING | 2442 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 54 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 118 |
SPLICE_SITE_REGION | 7 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 51 |
START_GAINED | 53 |
START_LOST | 3 |
STOP_GAINED | 19 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 1 |
STOP_LOST | 8 |
SYNONYMOUS_CODING | 3271 |
SYNONYMOUS_STOP | 1 |
None | 0 |
Type | Total Variants |
---|---|
homopolymer_region | 4 |
homopolymer_region;off_target | 26 |
low_coverage | 141 |
low_coverage;homopolymer_region;off_target | 1 |
low_coverage;low_variant_fraction;off_target | 2 |
low_coverage;off_target | 3617 |
low_variant_fraction | 367 |
low_variant_fraction;off_target | 135 |
off_target | 9488 |
PASS | 6236 |
Quality | Value |
---|---|
Min | 101.0 |
Average | 1139.76709796673 |
Max | 10000.0 |
Read Depth | Value |
---|---|
Min | 7 |
Average | 62.076235200079935 |
Max | 2172 |
Type | Total Variants |
---|---|
None | 0 |