Name: df-full_variant_table
Variants: 20017
Novel Variants: 763 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| CODON_CHANGE_PLUS_CODON_DELETION | 75 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 22 |
| CODON_DELETION | 27 |
| CODON_INSERTION | 15 |
| FRAME_SHIFT | 23 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 8 |
| FRAME_SHIFT+STOP_GAINED | 2 |
| FRAME_SHIFT+STOP_LOST | 1 |
| GENE_FUSION | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 4 |
| MOTIF[MA0024.1:E2F1] | 2 |
| MOTIF[MA0058.1:Max] | 3 |
| MOTIF[MA0062.2:Gabp] | 3 |
| MOTIF[MA0079.1:SP1] | 1 |
| MOTIF[MA0079.2:SP1] | 1 |
| MOTIF[MA0099.2:AP1] | 1 |
| MOTIF[MA0114.1:HNF4A] | 1 |
| MOTIF[MA0139.1:CTCF] | 11 |
| MOTIF[MA0148.1:FOXA1] | 1 |
| MOTIF[MA0162.1:Egr1] | 8 |
| NON_SYNONYMOUS_CODING | 2442 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 54 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 2 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 118 |
| SPLICE_SITE_REGION | 7 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 51 |
| START_GAINED | 53 |
| START_LOST | 3 |
| STOP_GAINED | 19 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 8 |
| SYNONYMOUS_CODING | 3271 |
| SYNONYMOUS_STOP | 1 |
| None | 0 |
| Type | Total Variants |
|---|---|
| homopolymer_region | 4 |
| homopolymer_region;off_target | 26 |
| low_coverage | 141 |
| low_coverage;homopolymer_region;off_target | 1 |
| low_coverage;low_variant_fraction;off_target | 2 |
| low_coverage;off_target | 3617 |
| low_variant_fraction | 367 |
| low_variant_fraction;off_target | 135 |
| off_target | 9488 |
| PASS | 6236 |
| Quality | Value |
|---|---|
| Min | 101.0 |
| Average | 1139.76709796673 |
| Max | 10000.0 |
| Read Depth | Value |
|---|---|
| Min | 7 |
| Average | 62.076235200079935 |
| Max | 2172 |
| Type | Total Variants |
|---|---|
| None | 0 |