Name: ca-full_variant_table
Variants: 30877
Novel Variants: 1465 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 30877 19462 0/1 11415 1/1
Total Gene-associated SNVs 30877 19462 0/1 11415 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION119
CODON_CHANGE_PLUS_CODON_INSERTION34
CODON_DELETION45
CODON_INSERTION24
FRAME_SHIFT34
FRAME_SHIFT+SPLICE_SITE_REGION8
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST1
GENE_FUSION2
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]7
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]5
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]6
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0139.1:CTCF]17
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]8
NON_SYNONYMOUS_CODING2761
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION55
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS119
SPLICE_SITE_REGION9
SPLICE_SITE_REGION+SYNONYMOUS_CODING64
START_GAINED70
START_LOST4
STOP_GAINED20
STOP_LOST6
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING3520
SYNONYMOUS_STOP2
None0

Type Total Variants
539
MISSENSE2827
NONSENSE20
SILENT3586
None0

Type Total Variants
HIGH200
LOW3697
MODERATE3038
MODIFIER37
None0

Type Total Variants
homopolymer_region17
homopolymer_region;off_target104
low_coverage54
low_coverage;homopolymer_region;off_target1
low_coverage;low_variant_fraction;off_target4
low_coverage;off_target4258
low_variant_fraction678
low_variant_fraction;off_target426
off_target18569
PASS6766

Quality Value
Min101.0
Average1710.42073387959
Max10000.0

Read Depth Value
Min7
Average85.53288855782621
Max1380

Type Total Variants
None0

Chromossome Total Variants
12797
101279
112164
121704
13683
14837
151075
161293
171685
18620
191768
22549
20574
21497
22666
31523
41407
51443
61523
71475
81149
91393
X773