Name: 136
Variants: 139245
Novel Variants: 5938 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 139245 65120 0/1 366 1/0 73759 1/1
Total Gene-associated SNVs 139245 65120 0/1 366 1/0 73759 1/1

Type Total Variants
40
CODON_CHANGE_PLUS_CODON_DELETION96
CODON_CHANGE_PLUS_CODON_INSERTION50
CODON_DELETION37
CODON_INSERTION56
FRAME_SHIFT167
FRAME_SHIFT+SPLICE_SITE_REGION19
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST2
GENE_FUSION_REVERESE1
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]23
MOTIF[MA0014.1:Pax5]9
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]5
MOTIF[MA0062.2:Gabp]29
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0079.1:SP1]11
MOTIF[MA0079.2:SP1]29
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]4
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]8
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]96
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]35
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING6383
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION141
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS178
SPLICE_SITE_REGION59
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING153
START_GAINED236
START_LOST13
STOP_GAINED73
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_LOST10
STOP_LOST+SPLICE_SITE_REGION1
SYNONYMOUS_CODING7010
SYNONYMOUS_STOP5
TRANSCRIPT1
None0

Type Total Variants
1292
MISSENSE6549
NONSENSE73
SILENT7168
None0

Type Total Variants
HIGH476
LOW7625
MODERATE6765
MODIFIER216
None0

Type Total Variants
LowCoverage38869
LowCoverage;LowQual14906
LowCoverage;LowQual;SnpCluster414
LowCoverage;SnpCluster3340
LowQD650
LowQD;LowQual304
LowQD;LowQual;SnpCluster62
LowQD;SnpCluster204
LowQual819
LowQual;SnpCluster72
PASS74974
SnpCluster4631

Quality Value
Min30.0
Average807.345321268222
Max100348.0

Read Depth Value
Min0
Average45.955409529965166
Max5139

Type Total Variants
None0

Chromossome Total Variants
113205
106570
116931
126763
133292
143732
154710
166319
176903
182933
196463
210581
203351
212889
223049
37416
46575
55579
69384
77212
84889
96390
M40
X2480
Y1589