Name: s75952_filtered_snps_and_indels
Variants: 45623
Novel Variants: 907 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 22 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 148 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 93 |
| CODON_DELETION | 65 |
| CODON_INSERTION | 77 |
| FRAME_SHIFT | 217 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 41 |
| FRAME_SHIFT+START_LOST | 3 |
| FRAME_SHIFT+STOP_GAINED | 4 |
| FRAME_SHIFT+STOP_LOST | 4 |
| GENE_FUSION | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 13 |
| MOTIF[MA0024.1:E2F1] | 7 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0058.1:Max] | 6 |
| MOTIF[MA0062.1:Gabp] | 5 |
| MOTIF[MA0062.2:Gabp] | 19 |
| MOTIF[MA0065.2:PPARG] | 1 |
| MOTIF[MA0079.1:SP1] | 2 |
| MOTIF[MA0079.2:SP1] | 13 |
| MOTIF[MA0080.1:PU1] | 2 |
| MOTIF[MA0093.1:USF1] | 3 |
| MOTIF[MA0095.1:Yy1] | 8 |
| MOTIF[MA0114.1:HNF4A] | 3 |
| MOTIF[MA0138.2:Nrsf] | 1 |
| MOTIF[MA0139.1:CTCF] | 33 |
| MOTIF[MA0147.1:Cmyc] | 3 |
| MOTIF[MA0154.1:EBF] | 4 |
| MOTIF[MA0162.1:Egr1] | 21 |
| NON_SYNONYMOUS_CODING | 10099 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 209 |
| PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 250 |
| SPLICE_SITE_REGION | 28 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_DELETION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 242 |
| START_GAINED | 307 |
| START_LOST | 8 |
| STOP_GAINED | 78 |
| STOP_GAINED+CODON_INSERTION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 1 |
| STOP_LOST | 16 |
| STOP_LOST+SPLICE_SITE_REGION | 4 |
| SYNONYMOUS_CODING | 11186 |
| SYNONYMOUS_STOP | 10 |
| TRANSCRIPT | 3 |
| None | 0 |
| Type | Total Variants |
|---|---|
| PASS | 45623 |
| Quality | Value |
|---|---|
| Min | 10.15 |
| Average | 1516.68100979743 |
| Max | 83694.77 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 81.6206518641913 |
| Max | 2444 |
| Type | Total Variants |
|---|---|
| None | 0 |