Name: sleepdisorders_saxena_sleep_exome_
Variants: 160830
Novel Variants: 157236 (Not in latest DbSNP Build)

Type Total Variants
1047
CODON_CHANGE_PLUS_CODON_DELETION22
CODON_CHANGE_PLUS_CODON_INSERTION14
CODON_DELETION17
CODON_INSERTION16
FRAME_SHIFT638
FRAME_SHIFT+SPLICE_SITE_REGION20
FRAME_SHIFT+START_LOST2
FRAME_SHIFT+STOP_GAINED12
FRAME_SHIFT+STOP_LOST3
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]11
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]3
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]8
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]13
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.2:PU1]9
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]4
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]101
MOTIF[MA0147.1:Cmyc]13
MOTIF[MA0148.1:FOXA1]4
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]7
MOTIF[MA0162.1:Egr1]8
NON_SYNONYMOUS_CODING2114
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION65
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS78
SPLICE_SITE_REGION12
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING39
START_GAINED55
START_LOST4
STOP_GAINED94
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION2
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION6
STOP_LOST5
STOP_LOST+CODON_DELETION1
SYNONYMOUS_CODING1695
SYNONYMOUS_START3
SYNONYMOUS_STOP2
None0

Type Total Variants
3124
MISSENSE2189
NONSENSE100
SILENT822
None0

Type Total Variants
HIGH867
LOW1911
MODERATE2249
MODIFIER1208
None0

Type Total Variants
ExcessHet9653
PASS138419
VQSRTrancheINDEL95.00to96.00472
VQSRTrancheINDEL96.00to97.00190
VQSRTrancheINDEL97.00to99.00192
VQSRTrancheINDEL99.00to99.50503
VQSRTrancheINDEL99.50to99.90973
VQSRTrancheINDEL99.90to99.9558
VQSRTrancheINDEL99.95to100.0041
VQSRTrancheSNP99.70to99.802171
VQSRTrancheSNP99.80to99.902987
VQSRTrancheSNP99.90to99.952282
VQSRTrancheSNP99.95to100.002889

Quality Value
Min30.01
Average32892.2080863647
Max13149710.27

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
115307
106587
119547
128241
133388
145746
155894
166814
178940
182617
1910293
211161
203806
212181
223993
38560
46455
56640
69248
78672
85770
96727
M13
X3332
Y898