Name: udp2570_axeq_1_hs37d5_remdup-uniqmap
Variants: 72716
Novel Variants: 5189 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 72716 41830 0/1 30886 1/1
Total Gene-associated SNVs 72716 41830 0/1 30886 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION56
CODON_CHANGE_PLUS_CODON_INSERTION43
CODON_DELETION76
CODON_INSERTION66
FRAME_SHIFT131
FRAME_SHIFT+SPLICE_SITE_REGION35
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST2
MOTIF[MA0003.1:Ap2alpha]9
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]9
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]14
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]6
MOTIF[MA0139.1:CTCF]37
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING9662
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION203
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS259
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING249
START_GAINED185
START_LOST8
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED92
STOP_GAINED+SPLICE_SITE_REGION2
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION1
STOP_LOST19
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10624
SYNONYMOUS_STOP8
TRANSCRIPT1
None0

Type Total Variants
1020
MISSENSE9897
NONSENSE94
SILENT10881
None0

Type Total Variants
HIGH561
LOW11153
MODERATE10108
MODIFIER70
None0

Type Total Variants
.72716

Quality Value
Min3.01
Average124.339667610981
Max226.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
16830
103324
114689
123971
131419
142681
152423
163242
174212
181230
194895
25272
201725
21997
221728
34054
42889
53106
63246
73876
82741
93000
X1154
Y12