Name: udp2570_axeq_1_hs37d5_remdup-uniqmap
Variants: 72716
Novel Variants: 5189 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 56 |
CODON_CHANGE_PLUS_CODON_INSERTION | 43 |
CODON_DELETION | 76 |
CODON_INSERTION | 66 |
FRAME_SHIFT | 131 |
FRAME_SHIFT+SPLICE_SITE_REGION | 35 |
FRAME_SHIFT+START_LOST | 1 |
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 2 |
FRAME_SHIFT+STOP_LOST | 2 |
MOTIF[MA0003.1:Ap2alpha] | 9 |
MOTIF[MA0014.1:Pax5] | 3 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0058.1:Max] | 9 |
MOTIF[MA0059.1:Cmyc] | 2 |
MOTIF[MA0062.1:Gabp] | 2 |
MOTIF[MA0062.2:Gabp] | 14 |
MOTIF[MA0079.1:SP1] | 2 |
MOTIF[MA0079.2:SP1] | 8 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 1 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0093.1:USF1] | 2 |
MOTIF[MA0095.1:Yy1] | 5 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 4 |
MOTIF[MA0138.2:Nrsf] | 6 |
MOTIF[MA0139.1:CTCF] | 37 |
MOTIF[MA0147.1:Cmyc] | 3 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0162.1:Egr1] | 11 |
NON_SYNONYMOUS_CODING | 9662 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 203 |
NON_SYNONYMOUS_START | 2 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 259 |
SPLICE_SITE_REGION | 26 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 249 |
START_GAINED | 185 |
START_LOST | 8 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
START_LOST+CODON_DELETION | 1 |
STOP_GAINED | 92 |
STOP_GAINED+SPLICE_SITE_REGION | 2 |
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION | 1 |
STOP_LOST | 19 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 10624 |
SYNONYMOUS_STOP | 8 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
. | 72716 |
Quality | Value |
---|---|
Min | 3.01 |
Average | 124.339667610978 |
Max | 226.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 0.0 |
Max | 0 |
Type | Total Variants |
---|---|
None | 0 |