Name: udp2569_axeq_1_hs37d5_remdup-uniqmap
Variants: 72750
Novel Variants: 5931 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 58 |
CODON_CHANGE_PLUS_CODON_INSERTION | 37 |
CODON_DELETION | 106 |
CODON_INSERTION | 67 |
FRAME_SHIFT | 132 |
FRAME_SHIFT+SPLICE_SITE_REGION | 38 |
FRAME_SHIFT+STOP_GAINED | 1 |
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION | 2 |
FRAME_SHIFT+STOP_LOST | 5 |
MOTIF[MA0003.1:Ap2alpha] | 9 |
MOTIF[MA0016.1:RXRA] | 5 |
MOTIF[MA0024.1:E2F1] | 1 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0058.1:Max] | 10 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.1:Gabp] | 1 |
MOTIF[MA0062.2:Gabp] | 17 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 11 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 2 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0093.1:USF1] | 3 |
MOTIF[MA0095.1:Yy1] | 7 |
MOTIF[MA0099.2:AP1] | 1 |
MOTIF[MA0114.1:HNF4A] | 4 |
MOTIF[MA0138.2:Nrsf] | 4 |
MOTIF[MA0139.1:CTCF] | 36 |
MOTIF[MA0147.1:Cmyc] | 5 |
MOTIF[MA0148.1:FOXA1] | 1 |
MOTIF[MA0162.1:Egr1] | 16 |
NON_SYNONYMOUS_CODING | 9745 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 201 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 240 |
SPLICE_SITE_REGION | 24 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 211 |
START_GAINED | 167 |
START_LOST | 13 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 82 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 5 |
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION | 1 |
STOP_LOST | 21 |
STOP_LOST+SPLICE_SITE_REGION | 4 |
SYNONYMOUS_CODING | 10486 |
SYNONYMOUS_STOP | 8 |
None | 0 |
Type | Total Variants |
---|---|
. | 72750 |
Quality | Value |
---|---|
Min | 3.01 |
Average | 124.375017044675 |
Max | 225.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 0.0 |
Max | 0 |
Type | Total Variants |
---|---|
None | 0 |