Name: udp2569_axeq_1_hs37d5_remdup-uniqmap
Variants: 72750
Novel Variants: 5931 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 72750 41237 0/1 31513 1/1
Total Gene-associated SNVs 72750 41237 0/1 31513 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION58
CODON_CHANGE_PLUS_CODON_INSERTION37
CODON_DELETION106
CODON_INSERTION67
FRAME_SHIFT132
FRAME_SHIFT+SPLICE_SITE_REGION38
FRAME_SHIFT+STOP_GAINED1
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST5
MOTIF[MA0003.1:Ap2alpha]9
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]17
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]11
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]36
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]16
NON_SYNONYMOUS_CODING9745
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION201
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS240
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING211
START_GAINED167
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED82
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION5
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION1
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING10486
SYNONYMOUS_STOP8
None0

Type Total Variants
1028
MISSENSE9985
NONSENSE87
SILENT10705
None0

Type Total Variants
HIGH551
LOW10967
MODERATE10217
MODIFIER70
None0

Type Total Variants
.72750

Quality Value
Min3.01
Average124.375017044675
Max225.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
17043
103124
114751
124067
131405
142633
152389
163285
174289
181284
194999
25274
201879
211009
221628
33936
42982
53097
63166
73797
82675
93056
X963
Y19