Name: chnaka
Variants: 202490
Novel Variants: 50965 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 202490 106384 0/1 95658 1/1 448 1/2
Total Gene-associated SNVs 202490 106384 0/1 95658 1/1 448 1/2

Type Total Variants
46
CODON_CHANGE_PLUS_CODON_DELETION91
CODON_CHANGE_PLUS_CODON_INSERTION74
CODON_DELETION33
CODON_INSERTION50
FRAME_SHIFT56
FRAME_SHIFT+SPLICE_SITE_REGION12
FRAME_SHIFT+STOP_GAINED2
GENE_FUSION_REVERESE1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]13
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]3
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]14
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]15
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]11
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]5
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]13
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]82
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]7
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]7
MOTIF[MA0162.1:Egr1]16
NON_SYNONYMOUS_CODING4053
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION108
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS154
SPLICE_SITE_REGION17
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING96
START_GAINED121
START_LOST7
STOP_GAINED65
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION3
STOP_GAINED+SPLICE_SITE_REGION4
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION1
STOP_LOST9
SYNONYMOUS_CODING4456
SYNONYMOUS_STOP2
TRANSCRIPT1
None0

Type Total Variants
924
MISSENSE4178
NONSENSE69
SILENT4554
None0

Type Total Variants
HIGH319
LOW4807
MODERATE4410
MODIFIER189
None0

Type Total Variants
.202490

Quality Value
Min3.01516
Average53.6089291974127
Max228.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
117557
109676
119970
129547
136255
146025
156639
167831
177292
184806
196773
216667
204412
213694
223478
312414
412517
511017
612739
710702
89489
98640
M46
X3680
Y624