Name: chnaka
Variants: 202490
Novel Variants: 50965 (Not in latest DbSNP Build)
Type | Total Variants | |||
---|---|---|---|---|
Total SNVs | 202490 | 106384 0/1 | 95658 1/1 | 448 1/2 |
Total Gene-associated SNVs | 202490 | 106384 0/1 | 95658 1/1 | 448 1/2 |
Type | Total Variants |
---|---|
46 | |
CODON_CHANGE_PLUS_CODON_DELETION | 91 |
CODON_CHANGE_PLUS_CODON_INSERTION | 74 |
CODON_DELETION | 33 |
CODON_INSERTION | 50 |
FRAME_SHIFT | 56 |
FRAME_SHIFT+SPLICE_SITE_REGION | 12 |
FRAME_SHIFT+STOP_GAINED | 2 |
GENE_FUSION_REVERESE | 1 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 13 |
MOTIF[MA0014.1:Pax5] | 7 |
MOTIF[MA0016.1:RXRA] | 1 |
MOTIF[MA0024.1:E2F1] | 6 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0047.2:FOXA2] | 3 |
MOTIF[MA0058.1:Max] | 12 |
MOTIF[MA0059.1:Cmyc] | 3 |
MOTIF[MA0062.1:Gabp] | 3 |
MOTIF[MA0062.2:Gabp] | 14 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 5 |
MOTIF[MA0079.2:SP1] | 15 |
MOTIF[MA0080.1:PU1] | 1 |
MOTIF[MA0080.2:PU1] | 2 |
MOTIF[MA0093.1:USF1] | 11 |
MOTIF[MA0095.1:Yy1] | 8 |
MOTIF[MA0099.1:Cfos] | 5 |
MOTIF[MA0099.2:AP1] | 3 |
MOTIF[MA0114.1:HNF4A] | 13 |
MOTIF[MA0115.1:RNR1H2] | 1 |
MOTIF[MA0138.2:Nrsf] | 7 |
MOTIF[MA0139.1:CTCF] | 82 |
MOTIF[MA0140.1:Tal1] | 3 |
MOTIF[MA0147.1:Cmyc] | 7 |
MOTIF[MA0148.1:FOXA1] | 3 |
MOTIF[MA0154.1:EBF] | 7 |
MOTIF[MA0162.1:Egr1] | 16 |
NON_SYNONYMOUS_CODING | 4053 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 108 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 4 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 154 |
SPLICE_SITE_REGION | 17 |
SPLICE_SITE_REGION+CODON_DELETION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 96 |
START_GAINED | 121 |
START_LOST | 7 |
STOP_GAINED | 65 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED+CODON_INSERTION | 3 |
STOP_GAINED+SPLICE_SITE_REGION | 4 |
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION | 1 |
STOP_LOST | 9 |
SYNONYMOUS_CODING | 4456 |
SYNONYMOUS_STOP | 2 |
TRANSCRIPT | 1 |
None | 0 |
Type | Total Variants |
---|---|
. | 202490 |
Quality | Value |
---|---|
Min | 3.01516 |
Average | 53.6089291974151 |
Max | 228.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 0.0 |
Max | 0 |
Type | Total Variants |
---|---|
None | 0 |