Name: 94410feb
Variants: 186451
Novel Variants: 3995 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 186451 101004 0/1 482 1/0 84965 1/1
Total Gene-associated SNVs 186451 101004 0/1 482 1/0 84965 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION159
CODON_CHANGE_PLUS_CODON_INSERTION99
CODON_DELETION59
CODON_INSERTION88
FRAME_SHIFT321
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED10
FRAME_SHIFT+STOP_LOST4
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED5
MOTIF[MA0003.1:Ap2alpha]33
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]6
MOTIF[MA0024.1:E2F1]9
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]24
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]12
MOTIF[MA0062.2:Gabp]41
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]10
MOTIF[MA0079.2:SP1]33
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]7
MOTIF[MA0095.1:Yy1]19
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]9
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]11
MOTIF[MA0139.1:CTCF]108
MOTIF[MA0147.1:Cmyc]14
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]8
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]46
NON_SYNONYMOUS_CODING11592
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION248
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS252
SPLICE_SITE_REGION84
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING256
START_GAINED438
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED123
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST26
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING12026
SYNONYMOUS_STOP10
TRANSCRIPT5
None0

Type Total Variants
2006
MISSENSE11883
NONSENSE124
SILENT12292
None0

Type Total Variants
HIGH806
LOW13034
MODERATE12247
MODIFIER218
None0

Type Total Variants
LowCoverage39976
LowCoverage;LowQual12807
LowCoverage;LowQual;SnpCluster283
LowCoverage;SnpCluster1361
LowQD497
LowQD;LowQual269
LowQD;LowQual;SnpCluster65
LowQD;SnpCluster178
LowQual950
LowQual;SnpCluster71
PASS126087
SnpCluster3907

Quality Value
Min30.19
Average865.784327571507
Max91821.8

Read Depth Value
Min0
Average49.17830421933913
Max4552

Type Total Variants
None0

Chromossome Total Variants
118454
108159
1111051
1210529
133619
146251
156233
168214
179899
182872
1911090
212997
204833
212967
224470
310596
48076
58034
610427
79787
86682
97503
X3573
Y135