Name: exome_4_els var annotated
Variants: 9999
Novel Variants: 3331 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 6 |
CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
CODON_INSERTION | 3 |
FRAME_SHIFT | 39 |
FRAME_SHIFT+SPLICE_SITE_REGION | 7 |
FRAME_SHIFT+START_LOST | 2 |
MOTIF[MA0003.1:Ap2alpha] | 1 |
MOTIF[MA0058.1:Max] | 1 |
MOTIF[MA0139.1:CTCF] | 3 |
MOTIF[MA0154.1:EBF] | 1 |
MOTIF[MA0162.1:Egr1] | 1 |
NON_SYNONYMOUS_CODING | 2074 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 86 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 57 |
SPLICE_SITE_REGION | 3 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 36 |
START_GAINED | 11 |
STOP_GAINED | 39 |
STOP_GAINED+SPLICE_SITE_REGION | 3 |
STOP_LOST | 3 |
SYNONYMOUS_CODING | 1466 |
SYNONYMOUS_STOP | 2 |
None | 0 |
Type | Total Variants |
---|---|
GATKStandard | 320 |
GATKStandard;LowQual | 12 |
GATKStandard;repeat | 30 |
LowQual | 838 |
PASS | 5841 |
repeat | 10 |
TruthSensitivityTranche99.00to99.90 | 2468 |
TruthSensitivityTranche99.90to100.00 | 480 |
Quality | Value |
---|---|
Min | 10.02 |
Average | 507.557999799978 |
Max | 7060.13 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 35.55955595559556 |
Max | 249 |
Type | Total Variants |
---|---|
None | 0 |