Name: chan_pitt final
Variants: 95352
Novel Variants: 93152 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
620 | |
CODON_CHANGE_PLUS_CODON_DELETION | 17 |
CODON_CHANGE_PLUS_CODON_INSERTION | 13 |
CODON_DELETION | 12 |
CODON_INSERTION | 13 |
FRAME_SHIFT | 230 |
FRAME_SHIFT+SPLICE_SITE_REGION | 14 |
FRAME_SHIFT+START_LOST | 1 |
FRAME_SHIFT+STOP_GAINED | 5 |
FRAME_SHIFT+STOP_LOST | 1 |
MOTIF_DELETED | 1 |
MOTIF[MA0003.1:Ap2alpha] | 9 |
MOTIF[MA0014.1:Pax5] | 1 |
MOTIF[MA0016.1:RXRA] | 2 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 1 |
MOTIF[MA0058.1:Max] | 15 |
MOTIF[MA0059.1:Cmyc] | 1 |
MOTIF[MA0062.2:Gabp] | 10 |
MOTIF[MA0065.1:PPARG] | 2 |
MOTIF[MA0079.1:SP1] | 1 |
MOTIF[MA0079.2:SP1] | 4 |
MOTIF[MA0080.2:PU1] | 2 |
MOTIF[MA0093.1:USF1] | 9 |
MOTIF[MA0095.1:Yy1] | 3 |
MOTIF[MA0099.2:AP1] | 3 |
MOTIF[MA0114.1:HNF4A] | 6 |
MOTIF[MA0138.2:Nrsf] | 5 |
MOTIF[MA0139.1:CTCF] | 57 |
MOTIF[MA0147.1:Cmyc] | 12 |
MOTIF[MA0148.1:FOXA1] | 3 |
MOTIF[MA0154.1:EBF] | 6 |
MOTIF[MA0159.1:RXR] | 1 |
MOTIF[MA0162.1:Egr1] | 10 |
MOTIF[MA0239.1:Pax5] | 1 |
NON_SYNONYMOUS_CODING | 1557 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 38 |
NON_SYNONYMOUS_START | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 46 |
SPLICE_SITE_REGION | 12 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 24 |
START_GAINED | 26 |
START_LOST | 4 |
STOP_GAINED | 71 |
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 4 |
STOP_LOST | 5 |
SYNONYMOUS_CODING | 1323 |
SYNONYMOUS_START | 1 |
SYNONYMOUS_STOP | 2 |
None | 0 |
Quality | Value |
---|---|
Min | 10.15 |
Average | 928.669184285579 |
Max | 39084.77 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 50.174028861481666 |
Max | 1349 |
Type | Total Variants |
---|---|
None | 0 |