Name: chan_pitt final
Variants: 95352
Novel Variants: 93152 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 95352 55131 0/1 39962 1/1 259 1/2
Total Gene-associated SNVs 95352 55131 0/1 39962 1/1 259 1/2

Type Total Variants
620
CODON_CHANGE_PLUS_CODON_DELETION17
CODON_CHANGE_PLUS_CODON_INSERTION13
CODON_DELETION12
CODON_INSERTION13
FRAME_SHIFT230
FRAME_SHIFT+SPLICE_SITE_REGION14
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST1
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]9
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]15
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]10
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]57
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]6
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]10
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING1557
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION38
NON_SYNONYMOUS_START1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS46
SPLICE_SITE_REGION12
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING24
START_GAINED26
START_LOST4
STOP_GAINED71
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+SPLICE_SITE_REGION4
STOP_LOST5
SYNONYMOUS_CODING1323
SYNONYMOUS_START1
SYNONYMOUS_STOP2
None0

Type Total Variants
1883
MISSENSE1605
NONSENSE75
SILENT646
None0

Type Total Variants
HIGH382
LOW1446
MODERATE1652
MODIFIER729
None0

Type Total Variants
MG_INDEL_Filter397
MG_SNP_Filter4286
PASS90669

Quality Value
Min10.15
Average928.669184285581
Max39084.77

Read Depth Value
Min0
Average50.174028861481666
Max1349

Type Total Variants
None0

Chromossome Total Variants
19135
104204
115128
125256
131966
143640
153343
164281
175316
181645
197061
26675
202167
211278
222408
34984
43766
53745
65789
75422
83230
93703
X1167
Y43