Name: chan_pitt final
Variants: 95352
Novel Variants: 93152 (Not in latest DbSNP Build)
| Type | Total Variants |
|---|---|
| 620 | |
| CODON_CHANGE_PLUS_CODON_DELETION | 17 |
| CODON_CHANGE_PLUS_CODON_INSERTION | 13 |
| CODON_DELETION | 12 |
| CODON_INSERTION | 13 |
| FRAME_SHIFT | 230 |
| FRAME_SHIFT+SPLICE_SITE_REGION | 14 |
| FRAME_SHIFT+START_LOST | 1 |
| FRAME_SHIFT+STOP_GAINED | 5 |
| FRAME_SHIFT+STOP_LOST | 1 |
| MOTIF_DELETED | 1 |
| MOTIF[MA0003.1:Ap2alpha] | 9 |
| MOTIF[MA0014.1:Pax5] | 1 |
| MOTIF[MA0016.1:RXRA] | 2 |
| MOTIF[MA0035.2:Gata1] | 1 |
| MOTIF[MA0036.1:Gata2] | 1 |
| MOTIF[MA0058.1:Max] | 15 |
| MOTIF[MA0059.1:Cmyc] | 1 |
| MOTIF[MA0062.2:Gabp] | 10 |
| MOTIF[MA0065.1:PPARG] | 2 |
| MOTIF[MA0079.1:SP1] | 1 |
| MOTIF[MA0079.2:SP1] | 4 |
| MOTIF[MA0080.2:PU1] | 2 |
| MOTIF[MA0093.1:USF1] | 9 |
| MOTIF[MA0095.1:Yy1] | 3 |
| MOTIF[MA0099.2:AP1] | 3 |
| MOTIF[MA0114.1:HNF4A] | 6 |
| MOTIF[MA0138.2:Nrsf] | 5 |
| MOTIF[MA0139.1:CTCF] | 57 |
| MOTIF[MA0147.1:Cmyc] | 12 |
| MOTIF[MA0148.1:FOXA1] | 3 |
| MOTIF[MA0154.1:EBF] | 6 |
| MOTIF[MA0159.1:RXR] | 1 |
| MOTIF[MA0162.1:Egr1] | 10 |
| MOTIF[MA0239.1:Pax5] | 1 |
| NON_SYNONYMOUS_CODING | 1557 |
| NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 38 |
| NON_SYNONYMOUS_START | 1 |
| PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 46 |
| SPLICE_SITE_REGION | 12 |
| SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+CODON_INSERTION | 1 |
| SPLICE_SITE_REGION+SYNONYMOUS_CODING | 24 |
| START_GAINED | 26 |
| START_LOST | 4 |
| STOP_GAINED | 71 |
| STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
| STOP_GAINED+SPLICE_SITE_REGION | 4 |
| STOP_LOST | 5 |
| SYNONYMOUS_CODING | 1323 |
| SYNONYMOUS_START | 1 |
| SYNONYMOUS_STOP | 2 |
| None | 0 |
| Quality | Value |
|---|---|
| Min | 10.15 |
| Average | 928.669184285579 |
| Max | 39084.77 |
| Read Depth | Value |
|---|---|
| Min | 0 |
| Average | 50.174028861481666 |
| Max | 1349 |
| Type | Total Variants |
|---|---|
| None | 0 |