Name: 62644690_s62 bcfc filt pass
Variants: 139799
Novel Variants: 14316 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 139799 86006 0/1 53793 1/1
Total Gene-associated SNVs 139799 86006 0/1 53793 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION104
CODON_CHANGE_PLUS_CODON_INSERTION116
CODON_DELETION165
CODON_INSERTION186
FRAME_SHIFT183
FRAME_SHIFT+SPLICE_SITE_REGION54
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION2
FRAME_SHIFT+STOP_LOST5
GENE_FUSION1
MOTIF_DELETED5
MOTIF[MA0003.1:Ap2alpha]34
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]19
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]32
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]28
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]3
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]6
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]92
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]16
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]5
MOTIF[MA0162.1:Egr1]67
NON_SYNONYMOUS_CODING12668
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION250
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS308
SPLICE_SITE_REGION40
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING254
START_GAINED332
START_LOST12
START_LOST+CODON_DELETION1
STOP_GAINED129
STOP_GAINED+CODON_INSERTION7
STOP_GAINED+SPLICE_SITE_REGION3
STOP_GAINED+SPLICE_SITE_REGION+CODON_INSERTION1
STOP_LOST26
STOP_LOST+CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12751
SYNONYMOUS_STOP8
TRANSCRIPT6
None0

Type Total Variants
1893
MISSENSE12961
NONSENSE132
SILENT13013
None0

Type Total Variants
HIGH747
LOW13576
MODERATE13490
MODIFIER186
None0

Type Total Variants
PASS139799

Quality Value
Min10.0437
Average148.831775057023
Max226.77

Read Depth Value
Min1
Average36.89895492814684
Max4347

Type Total Variants
None0

Chromossome Total Variants
113570
105946
117990
127639
133001
144660
154414
166104
178680
182199
199049
210309
203607
211970
223029
37568
45629
55933
67659
77356
84708
95945
X2826
Y8