Name: 62644690_s62 hpcl fboth pass
Variants: 137017
Novel Variants: 2174 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 137017 84240 0/1 52497 1/1 280 1/2
Total Gene-associated SNVs 137017 84240 0/1 52497 1/1 280 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION169
CODON_CHANGE_PLUS_CODON_INSERTION102
CODON_DELETION56
CODON_INSERTION91
EXON_DELETED3
FRAME_SHIFT338
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED9
FRAME_SHIFT+STOP_LOST4
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED11
MOTIF[MA0003.1:Ap2alpha]31
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]2
MOTIF[MA0058.1:Max]19
MOTIF[MA0059.1:Cmyc]2
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]25
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]7
MOTIF[MA0079.2:SP1]25
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]4
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]12
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]85
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]16
MOTIF[MA0154.1:EBF]4
MOTIF[MA0162.1:Egr1]58
NON_SYNONYMOUS_CODING11745
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION241
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS6
PROTEIN_STRUCTURAL_INTERACTION_LOCUS288
SPLICE_SITE_REGION35
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING246
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED325
START_LOST12
STOP_GAINED112
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12232
SYNONYMOUS_STOP7
TRANSCRIPT2
None0

Type Total Variants
1829
MISSENSE12027
NONSENSE115
SILENT12486
None0

Type Total Variants
HIGH855
LOW13031
MODERATE12407
MODIFIER164
None0

Type Total Variants
PASS137017

Quality Value
Min10.15
Average790.843868862896
Max69793.8

Read Depth Value
Min0
Average45.19397592999409
Max1855

Type Total Variants
None0

Chromossome Total Variants
113264
105765
117841
127377
132845
144645
154340
166006
178416
182206
198708
210167
203559
211953
222946
37495
45609
55955
67569
77079
84607
95869
X2789
Y7