Name: drift-nimh snps indels vqsr qced
Variants: 65404
Novel Variants: 12120 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION105
CODON_CHANGE_PLUS_CODON_INSERTION120
CODON_DELETION46
CODON_INSERTION97
FRAME_SHIFT1096
FRAME_SHIFT+SPLICE_SITE_REGION59
FRAME_SHIFT+START_LOST7
FRAME_SHIFT+STOP_GAINED44
FRAME_SHIFT+STOP_LOST6
MOTIF[MA0003.1:Ap2alpha]19
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]17
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]14
MOTIF[MA0080.1:PU1]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]2
MOTIF[MA0105.1:NFKB]4
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]3
MOTIF[MA0139.1:CTCF]42
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0154.1:EBF]5
MOTIF[MA0162.1:Egr1]30
NON_SYNONYMOUS_CODING10678
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS245
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_INSERTION3
SPLICE_SITE_REGION+SYNONYMOUS_CODING221
START_GAINED205
START_LOST11
STOP_GAINED122
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION10
STOP_GAINED+CODON_INSERTION5
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING10702
SYNONYMOUS_STOP7
TRANSCRIPT4
None0

Type Total Variants
2262
MISSENSE10932
NONSENSE123
SILENT10930
None0

Type Total Variants
HIGH1635
LOW11269
MODERATE11269
MODIFIER74
None0

Type Total Variants
HighMissing3649
PASS44783
VQSRTrancheINDEL99.00to99.501195
VQSRTrancheINDEL99.50to99.903649
VQSRTrancheINDEL99.90to100.00827
VQSRTrancheSNP99.50to99.908580
VQSRTrancheSNP99.90to100.002721

Quality Value
Min30.3
Average323313.82501437
Max7434906.38

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
16622
102869
114125
123253
131113
142058
152203
163046
174097
181099
194815
24424
201567
21954
221636
33493
42422
52847
63711
73093
82255
92848
X842
Y12