Name: dg001 final
Variants: 84289
Novel Variants: 558 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 84289 49444 0/1 34715 1/1 130 1/2
Total Gene-associated SNVs 84289 49444 0/1 34715 1/1 130 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION127
CODON_CHANGE_PLUS_CODON_INSERTION82
CODON_DELETION48
CODON_INSERTION64
FRAME_SHIFT247
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED4
FRAME_SHIFT+STOP_LOST2
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]11
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]21
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]6
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]54
MOTIF[MA0147.1:Cmyc]4
MOTIF[MA0154.1:EBF]1
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]15
NON_SYNONYMOUS_CODING10160
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION223
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS261
SPLICE_SITE_REGION24
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING238
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED204
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED90
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING10996
SYNONYMOUS_STOP6
TRANSCRIPT2
None0

Type Total Variants
1296
MISSENSE10420
NONSENSE91
SILENT11241
None0

Type Total Variants
HIGH695
LOW11551
MODERATE10707
MODIFIER95
None0

Type Total Variants
MG_INDEL_Filter54
MG_SNP_Filter1578
PASS82657

Quality Value
Min30.29
Average893.541486907822
Max25648.77

Read Depth Value
Min1
Average45.04080010440271
Max866

Type Total Variants
None0

Chromossome Total Variants
18658
103811
115753
124532
131664
143009
152803
163696
174860
181333
195627
25762
202235
211291
221909
34472
43502
53581
63712
74566
83051
93444
X1011
Y7