Name: pcg-f60 allchr snpeff p sal sal10_1 clinvar candidate_genes_tagged
Variants: 113571
Novel Variants: 1162 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION56
CODON_CHANGE_PLUS_CODON_INSERTION34
CODON_DELETION27
CODON_INSERTION24
FRAME_SHIFT139
FRAME_SHIFT+SPLICE_SITE_REGION17
FRAME_SHIFT+START_LOST1
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
GENE_FUSION_REVERESE2
MOTIF[MA0003.1:Ap2alpha]1
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0058.1:Max]8
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]4
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]2
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]39
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0154.1:EBF]2
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]4
NON_SYNONYMOUS_CODING7593
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION175
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS196
SPLICE_SITE_REGION38
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+SYNONYMOUS_CODING191
START_GAINED127
START_LOST6
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED77
STOP_LOST15
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING7735
SYNONYMOUS_STOP6
None0

Type Total Variants
767
MISSENSE7792
NONSENSE77
SILENT7932
None0

Type Total Variants
HIGH465
LOW8134
MODERATE7912
MODIFIER57
None0

Type Total Variants
map466
map;mrd10;mrd152280
map;mrd1599
mrd10;mrd1560808
mrd159523
PASS40395

Quality Value
Min30.0
Average4006.23932702908
Max69967.86

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
112456
105373
116503
126268
132966
144231
154207
164040
182167
195439
29429
202450
211891
222333
37078
45705
55503
67580
76127
84376
94729
MT73
X2577
Y70