Name: yushu_s1 hg19_multianno
Variants: 112878
Novel Variants: 3634 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 112878 77961 0/1 34917 1/1
Total Gene-associated SNVs 112878 77961 0/1 34917 1/1

Type Total Variants
3
CODON_CHANGE_PLUS_CODON_DELETION166
CODON_CHANGE_PLUS_CODON_INSERTION52
CODON_DELETION54
CODON_INSERTION52
FRAME_SHIFT200
FRAME_SHIFT+SPLICE_SITE_REGION34
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+STOP_LOST+SPLICE_SITE_REGION1
GENE_FUSION2
MOTIF[MA0003.1:Ap2alpha]5
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]10
MOTIF[MA0059.1:Cmyc]3
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]11
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]13
MOTIF[MA0080.1:PU1]1
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]65
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0154.1:EBF]2
MOTIF[MA0162.1:Egr1]21
NON_SYNONYMOUS_CODING10145
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION225
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS214
SPLICE_SITE_REGION30
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING224
START_GAINED166
START_LOST9
STOP_GAINED80
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST19
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING10464
SYNONYMOUS_STOP9
None0

Type Total Variants
1163
MISSENSE10402
NONSENSE81
SILENT10697
None0

Type Total Variants
HIGH580
LOW10957
MODERATE10697
MODIFIER109
None0

Type Total Variants
PASS112878

Quality Value
Min0.0
Average0.0
Max0.0

Read Depth Value
Min10
Average44.447199631460514
Max3192

Type Total Variants
None0

Chromossome Total Variants
111410
104928
116475
126341
132282
143919
153898
164828
175768
182104
196178
28482
202582
211926
222292
36910
45020
55120
66675
75592
84052
94790
M3
X1067
Y236