Name: allsamples as snp_indel_pass_annotated
Variants: 73482
Novel Variants: 72750 (Not in latest DbSNP Build)

Type Total Variants
201
CODON_CHANGE_PLUS_CODON_DELETION29
CODON_CHANGE_PLUS_CODON_INSERTION21
CODON_DELETION25
CODON_INSERTION23
FRAME_SHIFT894
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED12
FRAME_SHIFT+STOP_LOST1
MOTIF_DELETED3
MOTIF[MA0003.1:Ap2alpha]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]3
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]2
MOTIF[MA0062.2:Gabp]3
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]4
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]3
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]6
MOTIF[MA0099.2:AP1]2
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]4
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]33
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS2
SPLICE_SITE_REGION6
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION3
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION2
STOP_GAINED+CODON_INSERTION3
None0

Type Total Variants
1356
None0

Type Total Variants
HIGH963
LOW93
MODERATE99
MODIFIER201
None0

Type Total Variants
PASS73482

Quality Value
Min30.0
Average5276.73793976754
Max1215940.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
16611
103749
113667
123685
132588
142405
152219
162205
172601
181901
192364
26114
201854
211245
221180
35014
44912
54347
64224
74224
83291
93082