Name: 001 final
Variants: 108589
Novel Variants: 1574 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 108589 61712 0/1 46495 1/1 382 1/2
Total Gene-associated SNVs 108589 61712 0/1 46495 1/1 382 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION137
CODON_CHANGE_PLUS_CODON_INSERTION83
CODON_DELETION59
CODON_INSERTION79
FRAME_SHIFT281
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
GENE_FUSION_REVERESE2
MOTIF_DELETED5
MOTIF[MA0003.1:Ap2alpha]20
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]12
MOTIF[MA0059.1:Cmyc]4
MOTIF[MA0062.1:Gabp]3
MOTIF[MA0062.2:Gabp]24
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.2:PU1]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]7
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]5
MOTIF[MA0138.2:Nrsf]5
MOTIF[MA0139.1:CTCF]78
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]21
NON_SYNONYMOUS_CODING11152
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION247
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS237
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING252
START_GAINED244
START_LOST13
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED102
STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11229
SYNONYMOUS_STOP11
TRANSCRIPT1
None0

Type Total Variants
1443
MISSENSE11437
NONSENSE103
SILENT11492
None0

Type Total Variants
HIGH723
LOW11869
MODERATE11760
MODIFIER123
None0

Type Total Variants
MG_INDEL_Filter218
MG_SNP_Filter4144
PASS104227

Quality Value
Min30.04
Average1562.9803705724
Max100973.77

Read Depth Value
Min0
Average78.8415124920572
Max4426

Type Total Variants
None0

Chromossome Total Variants
111546
105049
115899
125451
132176
143917
154059
165317
175825
181649
197116
27964
202827
211452
222985
35641
44485
54702
64809
75761
83391
95014
X1405
Y149