Name: mpileup-final_calls_arg_046
Variants: 444917
Novel Variants: 57919 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 444917 83287 0/1 361260 1/1 370 1/2
Total Gene-associated SNVs 444917 83287 0/1 361260 1/1 370 1/2

Type Total Variants
50
CODON_CHANGE_PLUS_CODON_DELETION143
CODON_CHANGE_PLUS_CODON_INSERTION143
CODON_DELETION58
CODON_INSERTION99
FRAME_SHIFT174
FRAME_SHIFT+SPLICE_SITE_REGION42
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED2
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]37
MOTIF[MA0014.1:Pax5]9
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]13
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0047.2:FOXA2]5
MOTIF[MA0058.1:Max]40
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]45
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0065.2:PPARG]8
MOTIF[MA0079.1:SP1]19
MOTIF[MA0079.2:SP1]51
MOTIF[MA0080.1:PU1]6
MOTIF[MA0080.2:PU1]9
MOTIF[MA0083.1:Srf]6
MOTIF[MA0093.1:USF1]34
MOTIF[MA0095.1:Yy1]18
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]11
MOTIF[MA0114.1:HNF4A]21
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]33
MOTIF[MA0139.1:CTCF]257
MOTIF[MA0140.1:Tal1]4
MOTIF[MA0147.1:Cmyc]20
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]16
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]68
NON_SYNONYMOUS_CODING11246
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION246
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS281
SPLICE_SITE_REGION44
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING263
START_GAINED350
START_LOST14
START_LOST+CODON_DELETION2
STOP_GAINED96
STOP_GAINED+CODON_INSERTION3
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST21
STOP_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11724
SYNONYMOUS_STOP9
TRANSCRIPT4
None0

Type Total Variants
2175
MISSENSE11532
NONSENSE97
SILENT11996
None0

Type Total Variants
HIGH650
LOW12691
MODERATE11936
MODIFIER523
None0

Type Total Variants
.444917

Quality Value
Min3.01176
Average48.8126306087266
Max228.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
138103
1022569
1123299
1220918
1313093
1413454
1514418
1617857
1717528
1811088
1917109
235064
2011086
217643
229077
326806
425010
523026
625671
723460
820015
918853
M50
X8341
Y1379