Name: filtered4
Variants: 176445
Novel Variants: 26 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 176445 50651 0/1 57512 1/0 68282 1/1
Total Gene-associated SNVs 176445 50651 0/1 57512 1/0 68282 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION1
FRAME_SHIFT7
FRAME_SHIFT+SPLICE_SITE_REGION2
MOTIF[MA0003.1:Ap2alpha]3
MOTIF[MA0005.1:MEF2C]1
MOTIF[MA0024.1:E2F1]2
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]3
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0047.2:FOXA2]5
MOTIF[MA0058.1:Max]8
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]1
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]6
MOTIF[MA0080.2:PU1]4
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]11
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]10
MOTIF[MA0099.2:AP1]9
MOTIF[MA0105.1:NFKB]2
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0138.2:Nrsf]10
MOTIF[MA0139.1:CTCF]45
MOTIF[MA0140.1:Tal1]4
MOTIF[MA0147.1:Cmyc]3
MOTIF[MA0148.1:FOXA1]3
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]5
NON_SYNONYMOUS_CODING4944
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION140
NON_SYNONYMOUS_START3
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS158
SPLICE_SITE_REGION8
SPLICE_SITE_REGION+SYNONYMOUS_CODING66
START_GAINED59
START_LOST11
STOP_GAINED234
STOP_GAINED+SPLICE_SITE_REGION7
STOP_LOST7
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING1271
None0

Type Total Variants
399
MISSENSE5107
NONSENSE241
SILENT1337
None0

Type Total Variants
HIGH431
LOW1458
MODERATE5085
MODIFIER110
None0

Type Total Variants
.160157
DUPE138
DUPE;ZCALL_DIFF25
ZCALL_DIFF16125

Quality Value
Min0.0
Average0.0
Max0.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
113568
108548
118659
128204
136321
145645
155530
165774
175165
185008
194005
214110
204000
212530
222535
311778
410991
59999
612580
79674
88927
97605
MT1
X5100
Y188