Name: mm190528hvp
Variants: 153167
Novel Variants: 3144 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 153167 93644 0/1 59045 1/1 478 1/2
Total Gene-associated SNVs 153167 93644 0/1 59045 1/1 478 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION129
CODON_CHANGE_PLUS_CODON_INSERTION79
CODON_DELETION51
CODON_INSERTION70
FRAME_SHIFT173
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST5
GENE_FUSION_REVERESE2
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]34
MOTIF[MA0014.1:Pax5]4
MOTIF[MA0016.1:RXRA]6
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0058.1:Max]22
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]34
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]22
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]5
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]8
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.2:Nrsf]11
MOTIF[MA0139.1:CTCF]131
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0154.1:EBF]6
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]42
NON_SYNONYMOUS_CODING13444
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION266
NON_SYNONYMOUS_START4
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS276
SPLICE_SITE_REGION44
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING262
START_GAINED371
START_LOST17
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED155
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST27
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING12800
SYNONYMOUS_STOP14
TRANSCRIPT3
None0

Type Total Variants
1648
MISSENSE13760
NONSENSE158
SILENT13076
None0

Type Total Variants
HIGH718
LOW13648
MODERATE14042
MODIFIER234
None0

Type Total Variants
.145247
LowQual7920

Quality Value
Min10.17
Average1099.83693282547
Max65422.19

Read Depth Value
Min1
Average76.3967303662016
Max8498

Type Total Variants
None0

Chromossome Total Variants
114828
106534
119157
128263
132675
145273
155438
167200
178630
182512
199473
210707
203913
212421
224194
38501
46162
56483
68816
78086
84868
96847
X1942
Y244