Name: skaz004 gatk snp
Variants: 209101
Novel Variants: 204316 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 209101 93287 0/1 115743 1/1 71 1/2
Total Gene-associated SNVs 209101 93287 0/1 115743 1/1 71 1/2

Type Total Variants
1451
MOTIF[MA0003.1:Ap2alpha]18
MOTIF[MA0014.1:Pax5]3
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0035.2:Gata1]2
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]6
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]17
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]2
MOTIF[MA0079.2:SP1]10
MOTIF[MA0080.2:PU1]8
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]15
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]9
MOTIF[MA0114.1:HNF4A]11
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]134
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]5
MOTIF[MA0154.1:EBF]10
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]16
NON_SYNONYMOUS_CODING2743
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION100
NON_SYNONYMOUS_START1
NON_SYNONYMOUS_START+SPLICE_SITE_REGION1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS73
SPLICE_SITE_REGION13
SPLICE_SITE_REGION+SYNONYMOUS_CODING55
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED83
START_LOST7
STOP_GAINED117
STOP_GAINED+SPLICE_SITE_REGION10
STOP_LOST8
SYNONYMOUS_CODING2213
SYNONYMOUS_START4
SYNONYMOUS_STOP2
None0

Type Total Variants
3215
MISSENSE2860
NONSENSE127
SILENT1011
None0

Type Total Variants
HIGH215
LOW2457
MODERATE2843
MODIFIER1698
None0

Type Total Variants
PASS209101

Quality Value
Min30.29
Average1071.67835821036
Max51871.73

Read Depth Value
Min0
Average52.55281897264958
Max1361

Type Total Variants
None0

Chromossome Total Variants
119049
109794
1111686
1210186
134686
146876
157080
168939
1710621
183898
1912525
214207
206023
213138
225869
310801
48866
59462
612289
712045
87797
99006
M92
X4166