Name: sample15_s3_s3_001_filtered_dp10_splitted
Variants: 149179
Novel Variants: 3709 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 149179 97263 0/1 51916 1/1
Total Gene-associated SNVs 149179 97263 0/1 51916 1/1

Type Total Variants
1
CODON_CHANGE_PLUS_CODON_DELETION181
CODON_CHANGE_PLUS_CODON_INSERTION102
CODON_DELETION73
CODON_INSERTION73
FRAME_SHIFT256
FRAME_SHIFT+SPLICE_SITE_REGION41
FRAME_SHIFT+START_LOST9
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST3
GENE_FUSION3
GENE_FUSION_REVERESE1
MOTIF_DELETED8
MOTIF[MA0003.1:Ap2alpha]33
MOTIF[MA0014.1:Pax5]8
MOTIF[MA0016.1:RXRA]2
MOTIF[MA0024.1:E2F1]8
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]20
MOTIF[MA0059.1:Cmyc]8
MOTIF[MA0062.1:Gabp]6
MOTIF[MA0062.2:Gabp]34
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]37
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]6
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]5
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]4
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0138.2:Nrsf]9
MOTIF[MA0139.1:CTCF]112
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]11
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]5
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]47
NON_SYNONYMOUS_CODING11438
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION262
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS265
SPLICE_SITE_REGION41
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING263
START_GAINED374
START_LOST7
START_LOST+CODON_CHANGE_PLUS_CODON_DELETION1
START_LOST+CODON_DELETION1
STOP_GAINED94
STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION2
STOP_LOST21
STOP_LOST+SPLICE_SITE_REGION4
SYNONYMOUS_CODING11757
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
1849
MISSENSE11733
NONSENSE96
SILENT12030
None0

Type Total Variants
HIGH721
LOW12640
MODERATE12131
MODIFIER216
None0

Type Total Variants
.147269
LowQual1910

Quality Value
Min10.15
Average1780.21579954618
Max60024.8

Read Depth Value
Min0
Average92.86410285630015
Max2918

Type Total Variants
None0
2|22
25
5|51

Chromossome Total Variants
115327
106873
118497
127777
133067
144388
155167
166965
178206
182526
199245
211441
203484
212531
223949
37797
46242
56393
68381
77281
84928
96498
M1
X1927
Y288