Name: ctr0100514_mex083_jonathan_resendiz_20190502090400_pass
Variants: 37152
Novel Variants: 215 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 37152 21231 0/1 15855 1/1 66 1/2
Total Gene-associated SNVs 37152 21231 0/1 15855 1/1 66 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION90
CODON_CHANGE_PLUS_CODON_INSERTION67
CODON_DELETION32
CODON_INSERTION51
FRAME_SHIFT109
FRAME_SHIFT+SPLICE_SITE_REGION38
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
MOTIF[MA0003.1:Ap2alpha]10
MOTIF[MA0014.1:Pax5]2
MOTIF[MA0024.1:E2F1]6
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]4
MOTIF[MA0062.1:Gabp]4
MOTIF[MA0062.2:Gabp]18
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]8
MOTIF[MA0080.1:PU1]3
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]5
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]18
MOTIF[MA0147.1:Cmyc]5
MOTIF[MA0154.1:EBF]3
MOTIF[MA0162.1:Egr1]18
NON_SYNONYMOUS_CODING9665
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION218
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS228
SPLICE_SITE_REGION26
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING248
START_GAINED301
START_LOST8
STOP_GAINED75
STOP_LOST16
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING10772
SYNONYMOUS_STOP12
TRANSCRIPT1
None0

Type Total Variants
1079
MISSENSE9910
NONSENSE75
SILENT11032
None0

Type Total Variants
HIGH491
LOW11423
MODERATE10126
MODIFIER56
None0

Type Total Variants
PASS37152

Quality Value
Min50.1
Average1784.15766472847
Max33480.73

Read Depth Value
Min5
Average97.10467807924203
Max1000

Type Total Variants
None0

Chromossome Total Variants
13886
101576
112586
121979
13659
141086
151177
161539
172401
18605
193012
22375
20948
21500
22992
31965
41406
51508
61601
71904
81370
91539
X531
Y7