Name: sample14_s2_s2_001_filtered_dp10_splitted
Variants: 146492
Novel Variants: 3636 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 146492 96240 0/1 50252 1/1
Total Gene-associated SNVs 146492 96240 0/1 50252 1/1

Type Total Variants
2
CODON_CHANGE_PLUS_CODON_DELETION177
CODON_CHANGE_PLUS_CODON_INSERTION89
CODON_DELETION74
CODON_INSERTION74
FRAME_SHIFT260
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST5
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST4
GENE_FUSION1
MOTIF_DELETED8
MOTIF[MA0003.1:Ap2alpha]34
MOTIF[MA0014.1:Pax5]6
MOTIF[MA0024.1:E2F1]11
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]18
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]8
MOTIF[MA0062.2:Gabp]35
MOTIF[MA0065.1:PPARG]3
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]32
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]1
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]12
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]112
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]17
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]43
NON_SYNONYMOUS_CODING11116
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION248
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS262
SPLICE_SITE_REGION47
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING239
START_GAINED340
START_LOST10
START_LOST+CODON_DELETION1
STOP_GAINED98
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST22
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING11541
SYNONYMOUS_STOP10
TRANSCRIPT1
None0

Type Total Variants
1783
MISSENSE11401
NONSENSE99
SILENT11790
None0

Type Total Variants
HIGH717
LOW12359
MODERATE11781
MODIFIER216
None0

Type Total Variants
.144647
LowQual1845

Quality Value
Min10.17
Average1770.63454304988
Max63561.8

Read Depth Value
Min0
Average91.47853807716463
Max3295

Type Total Variants
None0
2|22
24
31
51
5|51

Chromossome Total Variants
115249
106622
118426
127067
133106
144339
155186
166953
177686
182539
198908
211219
203427
212529
223728
37432
46072
56292
67728
77542
84914
96478
M2
X2702
Y346