Name: a-full_variant_table
Variants: 30075
Novel Variants: 1826 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 30075 17956 0/1 12119 1/1
Total Gene-associated SNVs 30075 17956 0/1 12119 1/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION142
CODON_CHANGE_PLUS_CODON_INSERTION18
CODON_DELETION51
CODON_INSERTION20
FRAME_SHIFT47
FRAME_SHIFT+SPLICE_SITE_REGION6
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST2
MOTIF[MA0003.1:Ap2alpha]3
MOTIF[MA0014.1:Pax5]1
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]1
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0058.1:Max]5
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.2:Gabp]5
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]3
MOTIF[MA0079.2:SP1]5
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]1
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]1
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]15
MOTIF[MA0162.1:Egr1]9
NON_SYNONYMOUS_CODING2679
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION59
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS98
SPLICE_SITE_REGION11
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING59
START_GAINED72
START_LOST2
STOP_GAINED20
STOP_LOST7
SYNONYMOUS_CODING3272
SYNONYMOUS_STOP1
None0

Type Total Variants
535
MISSENSE2748
NONSENSE20
SILENT3332
None0

Type Total Variants
HIGH189
LOW3447
MODERATE2970
MODIFIER29
None0

Type Total Variants
homopolymer_region9
homopolymer_region;off_target94
low_coverage15
low_coverage;low_variant_fraction;off_target2
low_coverage;off_target3533
low_variant_fraction657
low_variant_fraction;homopolymer_region;off_target3
low_variant_fraction;off_target685
off_target18819
PASS6258

Quality Value
Min101.0
Average3151.15102244389
Max10000.0

Read Depth Value
Min5
Average150.01795511221945
Max2651

Type Total Variants
None0

Chromossome Total Variants
12665
101332
111838
121810
13737
14785
15839
161364
171758
18600
191450
22511
20552
21563
22681
31546
41365
51544
61617
71424
81125
91457
X506
Y6