Name: sample13_s1_s1_001_filtered_dp10_splitted
Variants: 146588
Novel Variants: 3701 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 146588 94662 0/1 51926 1/1
Total Gene-associated SNVs 146588 94662 0/1 51926 1/1

Type Total Variants
2
CODON_CHANGE_PLUS_CODON_DELETION169
CODON_CHANGE_PLUS_CODON_INSERTION97
CODON_DELETION69
CODON_INSERTION73
FRAME_SHIFT254
FRAME_SHIFT+SPLICE_SITE_REGION40
FRAME_SHIFT+START_LOST6
FRAME_SHIFT+STOP_GAINED3
FRAME_SHIFT+STOP_LOST4
GENE_FUSION3
MOTIF_DELETED5
MOTIF[MA0003.1:Ap2alpha]37
MOTIF[MA0014.1:Pax5]9
MOTIF[MA0016.1:RXRA]1
MOTIF[MA0024.1:E2F1]9
MOTIF[MA0035.1:Gata1]1
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]25
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]9
MOTIF[MA0062.2:Gabp]39
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]10
MOTIF[MA0079.2:SP1]36
MOTIF[MA0080.1:PU1]1
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]3
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]10
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]11
MOTIF[MA0139.1:CTCF]101
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]3
MOTIF[MA0162.1:Egr1]53
NON_SYNONYMOUS_CODING11280
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION264
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS4
PROTEIN_STRUCTURAL_INTERACTION_LOCUS266
SPLICE_SITE_REGION41
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING252
START_GAINED352
START_LOST11
START_LOST+CODON_DELETION2
STOP_GAINED91
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION5
SYNONYMOUS_CODING11490
SYNONYMOUS_STOP10
TRANSCRIPT2
None0

Type Total Variants
1804
MISSENSE11585
NONSENSE92
SILENT11752
None0

Type Total Variants
HIGH714
LOW12338
MODERATE11956
MODIFIER225
None0

Type Total Variants
.144651
LowQual1937

Quality Value
Min10.17
Average1737.51381961998
Max67547.8

Read Depth Value
Min0
Average88.68148825279013
Max2649

Type Total Variants
None0
2|22
24
31
51
5|51

Chromossome Total Variants
115168
106882
118379
127272
132999
144042
155259
166935
177646
182639
198681
211446
203490
212466
223707
37734
46290
56238
68276
77427
85035
96349
M2
X1893
Y333