Name: mm170802ap
Variants: 140930
Novel Variants: 2767 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 140930 86477 0/1 54081 1/1 372 1/2
Total Gene-associated SNVs 140930 86477 0/1 54081 1/1 372 1/2

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION110
CODON_CHANGE_PLUS_CODON_INSERTION69
CODON_DELETION51
CODON_INSERTION57
FRAME_SHIFT150
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED5
FRAME_SHIFT+STOP_LOST2
MOTIF_DELETED2
MOTIF[MA0003.1:Ap2alpha]25
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]9
MOTIF[MA0024.1:E2F1]4
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]19
MOTIF[MA0059.1:Cmyc]5
MOTIF[MA0062.1:Gabp]7
MOTIF[MA0062.2:Gabp]25
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.1:SP1]5
MOTIF[MA0079.2:SP1]23
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]5
MOTIF[MA0083.1:Srf]2
MOTIF[MA0093.1:USF1]6
MOTIF[MA0095.1:Yy1]13
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]2
MOTIF[MA0114.1:HNF4A]7
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]4
MOTIF[MA0139.1:CTCF]89
MOTIF[MA0140.1:Tal1]1
MOTIF[MA0147.1:Cmyc]12
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]3
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]40
NON_SYNONYMOUS_CODING11999
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION247
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS234
SPLICE_SITE_REGION45
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING262
START_GAINED324
START_LOST11
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
START_LOST+CODON_DELETION1
STOP_GAINED109
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST28
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12104
SYNONYMOUS_STOP9
TRANSCRIPT2
None0

Type Total Variants
1430
MISSENSE12289
NONSENSE110
SILENT12375
None0

Type Total Variants
HIGH594
LOW12876
MODERATE12534
MODIFIER200
None0

Type Total Variants
.136130
LowQual4800

Quality Value
Min10.2
Average1321.00888327697
Max65449.29

Read Depth Value
Min1
Average78.329440147591
Max4110

Type Total Variants
None0
2|22
27

Chromossome Total Variants
113465
105993
118934
127682
132858
144547
154673
166258
177928
182436
198631
29895
203882
212293
223309
37631
45979
55899
68587
77594
84994
95715
X1688
Y59