Name: combined sample_99.variant44
Variants: 158493
Novel Variants: 4815 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 158493 96070 0/1 3 0/10 3 0/11 4 0/12 4 0/13 1652 0/2 466 0/3 214 0/4 122 0/5 75 0/6 36 0/7 21 0/8 18 0/9 1 10/1 2 10/10 2 10/2 3 10/3 57999 1/1 1 1/10 1 11/11 1 11/2 2 1/14 2 11/4 1 11/9 371 1/2 1 12/12 62 1/3 1 13/14 19 1/4 2 14/1 1 14/14 15 1/5 8 1/6 7 1/7 1 1/8 1 1/9 194 2/1 494 2/2 32 2/3 16 2/4 9 2/5 3 2/6 2 2/7 4 2/8 1 2/9 51 3/1 45 3/2 132 3/3 9 3/4 5 3/5 1 3/6 7 3/7 1 3/8 1 3/9 25 4/1 1 4/11 1 4/14 25 4/2 6 4/3 66 4/4 2 4/5 2 4/6 1 4/7 2 4/8 1 4/9 12 5/1 8 5/2 2 5/3 4 5/4 33 5/5 2 5/6 1 5/8 1 5/9 3 6/1 1 6/12 6 6/2 1 6/3 2 6/4 2 6/5 18 6/6 2 6/7 1 6/8 7 7/1 1 7/13 2 7/2 3 7/3 2 7/4 1 7/5 2 7/6 9 7/7 2 7/8 1 7/9 1 8/1 1 8/11 1 8/14 1 8/2 1 8/3 2 8/5 1 8/6 9 8/8 2 9/1 1 9/10 3 9/2 2 9/4 1 9/5 1 9/8 6 9/9
Total Gene-associated SNVs 158493 96070 0/1 3 0/10 3 0/11 4 0/12 4 0/13 1652 0/2 466 0/3 214 0/4 122 0/5 75 0/6 36 0/7 21 0/8 18 0/9 1 10/1 2 10/10 2 10/2 3 10/3 57999 1/1 1 1/10 1 11/11 1 11/2 2 1/14 2 11/4 1 11/9 371 1/2 1 12/12 62 1/3 1 13/14 19 1/4 2 14/1 1 14/14 15 1/5 8 1/6 7 1/7 1 1/8 1 1/9 194 2/1 494 2/2 32 2/3 16 2/4 9 2/5 3 2/6 2 2/7 4 2/8 1 2/9 51 3/1 45 3/2 132 3/3 9 3/4 5 3/5 1 3/6 7 3/7 1 3/8 1 3/9 25 4/1 1 4/11 1 4/14 25 4/2 6 4/3 66 4/4 2 4/5 2 4/6 1 4/7 2 4/8 1 4/9 12 5/1 8 5/2 2 5/3 4 5/4 33 5/5 2 5/6 1 5/8 1 5/9 3 6/1 1 6/12 6 6/2 1 6/3 2 6/4 2 6/5 18 6/6 2 6/7 1 6/8 7 7/1 1 7/13 2 7/2 3 7/3 2 7/4 1 7/5 2 7/6 9 7/7 2 7/8 1 7/9 1 8/1 1 8/11 1 8/14 1 8/2 1 8/3 2 8/5 1 8/6 9 8/8 2 9/1 1 9/10 3 9/2 2 9/4 1 9/5 1 9/8 6 9/9

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION130
CODON_CHANGE_PLUS_CODON_INSERTION113
CODON_DELETION57
CODON_INSERTION106
FRAME_SHIFT380
FRAME_SHIFT+SPLICE_SITE_REGION44
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST4
GENE_FUSION2
GENE_FUSION_REVERESE1
MOTIF_DELETED18
MOTIF[MA0003.1:Ap2alpha]38
MOTIF[MA0014.1:Pax5]7
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]16
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]2
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]21
MOTIF[MA0059.1:Cmyc]10
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]43
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]17
MOTIF[MA0079.2:SP1]49
MOTIF[MA0080.1:PU1]3
MOTIF[MA0080.2:PU1]6
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]8
MOTIF[MA0095.1:Yy1]15
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]5
MOTIF[MA0105.1:NFKB]1
MOTIF[MA0114.1:HNF4A]12
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]115
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]16
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]9
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]88
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING12040
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION263
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS3
PROTEIN_STRUCTURAL_INTERACTION_LOCUS251
SPLICE_SITE_REGION123
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING261
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED607
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED144
STOP_GAINED+CODON_INSERTION2
STOP_GAINED+SPLICE_SITE_REGION5
STOP_LOST24
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12043
SYNONYMOUS_STOP15
TRANSCRIPT12
None0

Type Total Variants
2392
MISSENSE12346
NONSENSE149
SILENT12320
None0

Type Total Variants
HIGH891
LOW13324
MODERATE12713
MODIFIER279
None0

Type Total Variants
DRAGENHardINDEL81
DRAGENHardSNP1236
PASS157176

Quality Value
Min30.01
Average1630.79087120567
Max160266.0

Read Depth Value
Min0
Average90.49173780545513
Max4425

Type Total Variants
None0
2|22
23
31
5|51

Chromossome Total Variants
115322
106785
119516
128298
132958
145495
155451
166764
178916
182977
1910195
211111
204194
212307
223843
38941
46996
56878
68883
78314
85512
96476
X2212
Y149