Name: 1886106_bak chr20
Variants: 7589
Novel Variants: 689 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 7589 3485 0/1 4074 1/1 28 1/2 2 2/1
Total Gene-associated SNVs 7589 3485 0/1 4074 1/1 28 1/2 2 2/1

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION6
CODON_CHANGE_PLUS_CODON_INSERTION1
CODON_DELETION3
CODON_INSERTION1
FRAME_SHIFT14
MOTIF_DELETED5
MOTIF[MA0079.1:SP1]1
MOTIF[MA0079.2:SP1]1
MOTIF[MA0093.1:USF1]1
MOTIF[MA0095.1:Yy1]3
MOTIF[MA0138.2:Nrsf]1
MOTIF[MA0139.1:CTCF]3
MOTIF[MA0147.1:Cmyc]1
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]11
NON_SYNONYMOUS_CODING254
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION9
PROTEIN_STRUCTURAL_INTERACTION_LOCUS12
SPLICE_SITE_REGION1
SPLICE_SITE_REGION+CODON_DELETION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING6
START_GAINED21
STOP_GAINED1
SYNONYMOUS_CODING343
SYNONYMOUS_STOP1
None0

Type Total Variants
None0

Type Total Variants
HIGH27
LOW393
MODERATE275
MODIFIER7
None0

Type Total Variants
PASS6956
VQSRTrancheINDEL99.00to99.9024
VQSRTrancheINDEL99.90to100.003
VQSRTrancheSNP99.00to99.90522
VQSRTrancheSNP99.90to100.0084

Quality Value
Min3.25
Average845.203101857881
Max13225.77

Read Depth Value
Min1
Average42.92634075635789
Max473

Type Total Variants
None0

Chromossome Total Variants
207589