Name: combined sample_97.variant42
Variants: 169094
Novel Variants: 5178 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 169094 107908 0/1 10 0/10 1 0/11 2 0/12 2 0/13 1 0/14 1761 0/2 506 0/3 201 0/4 132 0/5 64 0/6 46 0/7 18 0/8 14 0/9 4 10/10 1 10/11 2 10/2 1 10/3 1 10/4 1 10/5 1 10/6 1 10/8 56473 1/1 3 1/10 3 11/11 1 1/12 1 11/3 401 1/2 1 12/2 75 1/3 1 13/13 1 13/7 27 1/4 1 14/11 1 14/14 20 1/5 1 15/2 8 1/6 1 16/16 7 1/7 1 17/5 4 1/8 3 1/9 210 2/1 2 2/10 1 2/13 501 2/2 42 2/3 23 2/4 11 2/5 10 2/6 1 2/8 77 3/1 2 3/10 1 3/11 1 3/14 42 3/2 143 3/3 11 3/4 5 3/5 4 3/6 2 3/8 1 3/9 19 4/1 21 4/2 7 4/3 65 4/4 2 4/5 4 4/6 2 4/7 7 5/1 4 5/10 1 5/11 7 5/2 2 5/3 1 5/4 34 5/5 1 5/6 3 5/7 1 5/8 4 5/9 5 6/1 1 6/11 6 6/2 5 6/3 2 6/4 4 6/5 28 6/6 1 6/9 7 7/1 1 7/3 1 7/4 3 7/5 2 7/6 13 7/7 1 8/1 4 8/2 1 8/3 1 8/4 1 8/5 1 8/6 6 8/8 1 8/9 3 9/1 2 9/2 2 9/3 1 9/5 1 9/8 3 9/9
Total Gene-associated SNVs 169094 107908 0/1 10 0/10 1 0/11 2 0/12 2 0/13 1 0/14 1761 0/2 506 0/3 201 0/4 132 0/5 64 0/6 46 0/7 18 0/8 14 0/9 4 10/10 1 10/11 2 10/2 1 10/3 1 10/4 1 10/5 1 10/6 1 10/8 56473 1/1 3 1/10 3 11/11 1 1/12 1 11/3 401 1/2 1 12/2 75 1/3 1 13/13 1 13/7 27 1/4 1 14/11 1 14/14 20 1/5 1 15/2 8 1/6 1 16/16 7 1/7 1 17/5 4 1/8 3 1/9 210 2/1 2 2/10 1 2/13 501 2/2 42 2/3 23 2/4 11 2/5 10 2/6 1 2/8 77 3/1 2 3/10 1 3/11 1 3/14 42 3/2 143 3/3 11 3/4 5 3/5 4 3/6 2 3/8 1 3/9 19 4/1 21 4/2 7 4/3 65 4/4 2 4/5 4 4/6 2 4/7 7 5/1 4 5/10 1 5/11 7 5/2 2 5/3 1 5/4 34 5/5 1 5/6 3 5/7 1 5/8 4 5/9 5 6/1 1 6/11 6 6/2 5 6/3 2 6/4 4 6/5 28 6/6 1 6/9 7 7/1 1 7/3 1 7/4 3 7/5 2 7/6 13 7/7 1 8/1 4 8/2 1 8/3 1 8/4 1 8/5 1 8/6 6 8/8 1 8/9 3 9/1 2 9/2 2 9/3 1 9/5 1 9/8 3 9/9

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION130
CODON_CHANGE_PLUS_CODON_INSERTION119
CODON_DELETION58
CODON_INSERTION110
FRAME_SHIFT396
FRAME_SHIFT+SPLICE_SITE_REGION45
FRAME_SHIFT+START_LOST3
FRAME_SHIFT+STOP_GAINED7
FRAME_SHIFT+STOP_GAINED+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_LOST3
GENE_FUSION1
GENE_FUSION_REVERESE1
MOTIF_DELETED13
MOTIF[MA0003.1:Ap2alpha]41
MOTIF[MA0014.1:Pax5]9
MOTIF[MA0016.1:RXRA]5
MOTIF[MA0024.1:E2F1]14
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]1
MOTIF[MA0047.2:FOXA2]1
MOTIF[MA0058.1:Max]27
MOTIF[MA0059.1:Cmyc]14
MOTIF[MA0062.1:Gabp]15
MOTIF[MA0062.2:Gabp]58
MOTIF[MA0065.1:PPARG]2
MOTIF[MA0065.2:PPARG]2
MOTIF[MA0079.1:SP1]9
MOTIF[MA0079.2:SP1]61
MOTIF[MA0080.1:PU1]5
MOTIF[MA0080.2:PU1]7
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]9
MOTIF[MA0095.1:Yy1]16
MOTIF[MA0099.1:Cfos]3
MOTIF[MA0099.2:AP1]3
MOTIF[MA0105.1:NFKB]2
MOTIF[MA0114.1:HNF4A]14
MOTIF[MA0115.1:RNR1H2]1
MOTIF[MA0138.1:Nrsf]2
MOTIF[MA0138.2:Nrsf]11
MOTIF[MA0139.1:CTCF]127
MOTIF[MA0140.1:Tal1]3
MOTIF[MA0147.1:Cmyc]25
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0154.1:EBF]10
MOTIF[MA0159.1:RXR]2
MOTIF[MA0162.1:Egr1]88
MOTIF[MA0239.1:Pax5]2
NON_SYNONYMOUS_CODING12746
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION255
NON_SYNONYMOUS_START3
PROTEIN_PROTEIN_INTERACTION_LOCUS5
PROTEIN_STRUCTURAL_INTERACTION_LOCUS281
SPLICE_SITE_REGION148
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING265
START_GAINED665
START_LOST16
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED144
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION6
STOP_LOST23
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12846
SYNONYMOUS_STOP10
TRANSCRIPT9
None0

Type Total Variants
2594
MISSENSE13046
NONSENSE150
SILENT13121
None0

Type Total Variants
HIGH937
LOW14238
MODERATE13423
MODIFIER313
None0

Type Total Variants
DRAGENHardINDEL82
DRAGENHardSNP1260
PASS167752

Quality Value
Min30.06
Average1589.66309443266
Max246343.0

Read Depth Value
Min0
Average81.13575289483956
Max4262

Type Total Variants
None0
41
2|21
26
5|51

Chromossome Total Variants
116458
107218
1110141
129642
133148
145751
155886
167483
179270
183214
1910881
211362
203989
212420
224212
39302
47368
57354
610392
78702
85976
96575
X2202
Y148