Name: wes 6160 filtered recode
Variants: 107825
Novel Variants: 5011 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION124
CODON_CHANGE_PLUS_CODON_INSERTION119
CODON_DELETION55
CODON_INSERTION99
FRAME_SHIFT304
FRAME_SHIFT+SPLICE_SITE_REGION43
FRAME_SHIFT+START_LOST7
FRAME_SHIFT+STOP_GAINED8
FRAME_SHIFT+STOP_LOST6
GENE_FUSION2
GENE_FUSION_REVERESE3
MOTIF_DELETED1
MOTIF[MA0003.1:Ap2alpha]37
MOTIF[MA0014.1:Pax5]10
MOTIF[MA0024.1:E2F1]7
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0058.1:Max]14
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]10
MOTIF[MA0062.2:Gabp]44
MOTIF[MA0079.1:SP1]17
MOTIF[MA0079.2:SP1]36
MOTIF[MA0080.1:PU1]2
MOTIF[MA0080.2:PU1]3
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]4
MOTIF[MA0095.1:Yy1]11
MOTIF[MA0099.1:Cfos]1
MOTIF[MA0099.2:AP1]3
MOTIF[MA0114.1:HNF4A]9
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]7
MOTIF[MA0139.1:CTCF]73
MOTIF[MA0147.1:Cmyc]10
MOTIF[MA0148.1:FOXA1]2
MOTIF[MA0154.1:EBF]4
MOTIF[MA0159.1:RXR]1
MOTIF[MA0162.1:Egr1]59
NON_SYNONYMOUS_CODING10924
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION224
NON_SYNONYMOUS_START1
PROTEIN_PROTEIN_INTERACTION_LOCUS2
PROTEIN_STRUCTURAL_INTERACTION_LOCUS237
SPLICE_SITE_REGION143
SPLICE_SITE_REGION+CODON_DELETION3
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING233
START_GAINED538
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED88
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION1
STOP_LOST18
STOP_LOST+SPLICE_SITE_REGION2
SYNONYMOUS_CODING11267
SYNONYMOUS_STOP10
TRANSCRIPT19
None0

Type Total Variants
None0

Type Total Variants
HIGH738
LOW12410
MODERATE11549
MODIFIER176
None0

Type Total Variants
PASS99798
VQSRTrancheINDEL99.00to99.1012
VQSRTrancheINDEL99.10to99.2018
VQSRTrancheINDEL99.20to99.3023
VQSRTrancheINDEL99.30to99.4039
VQSRTrancheINDEL99.40to99.5073
VQSRTrancheINDEL99.50to99.60213
VQSRTrancheINDEL99.60to99.70265
VQSRTrancheINDEL99.70to99.8080
VQSRTrancheINDEL99.80to99.9054
VQSRTrancheINDEL99.90to100.00137
VQSRTrancheSNP99.50to99.60256
VQSRTrancheSNP99.60to99.70480
VQSRTrancheSNP99.70to99.80992
VQSRTrancheSNP99.80to99.903319
VQSRTrancheSNP99.90to100.002066

Quality Value
Min10.73
Average495387.622044792
Max27516000.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
110981
104493
116197
125687
131937
143627
153713
164411
176239
182096
196921
27317
202531
211591
222475
35952
44616
54916
66258
75272
84144
94301
X2146
Y4