Name: combined sample_94.variant39
Variants: 168902
Novel Variants: 5997 (Not in latest DbSNP Build)

Type Total Variants
Total SNVs 168902 105717 0/1 11 0/10 3 0/11 3 0/12 1 0/15 1795 0/2 544 0/3 224 0/4 132 0/5 68 0/6 39 0/7 32 0/8 11 0/9 2 10/10 1 10/6 1 10/7 2 10/8 58340 1/1 1 11/4 384 1/2 1 12/1 1 12/10 1 12/6 1 12/7 1 12/8 66 1/3 1 13/10 2 13/13 1 13/14 1 13/8 25 1/4 1 14/4 1 14/9 19 1/5 6 1/6 1 16/12 7 1/7 5 1/8 2 1/9 252 2/1 488 2/2 53 2/3 14 2/4 12 2/5 4 2/6 5 2/7 2 2/9 82 3/1 1 3/10 31 3/2 133 3/3 15 3/4 15 3/5 5 3/6 8 3/7 3 3/8 1 3/9 26 4/1 1 4/10 14 4/2 10 4/3 64 4/4 3 4/5 3 4/6 1 4/7 3 4/8 1 4/9 13 5/1 2 5/11 1 5/13 13 5/2 2 5/3 5 5/4 33 5/5 3 5/6 4 5/7 2 5/8 2 5/9 5 6/1 1 6/10 3 6/2 3 6/3 3 6/4 3 6/5 23 6/6 2 6/7 3 6/8 1 6/9 5 7/1 1 7/19 5 7/2 5 7/3 11 7/7 1 7/8 1 8/11 1 8/12 1 8/2 2 8/3 1 8/4 3 8/5 2 8/7 14 8/8 1 8/9 2 9/1 1 9/12 5 9/2 2 9/3 1 9/4 1 9/5 1 9/6 1 9/7 3 9/9
Total Gene-associated SNVs 168902 105717 0/1 11 0/10 3 0/11 3 0/12 1 0/15 1795 0/2 544 0/3 224 0/4 132 0/5 68 0/6 39 0/7 32 0/8 11 0/9 2 10/10 1 10/6 1 10/7 2 10/8 58340 1/1 1 11/4 384 1/2 1 12/1 1 12/10 1 12/6 1 12/7 1 12/8 66 1/3 1 13/10 2 13/13 1 13/14 1 13/8 25 1/4 1 14/4 1 14/9 19 1/5 6 1/6 1 16/12 7 1/7 5 1/8 2 1/9 252 2/1 488 2/2 53 2/3 14 2/4 12 2/5 4 2/6 5 2/7 2 2/9 82 3/1 1 3/10 31 3/2 133 3/3 15 3/4 15 3/5 5 3/6 8 3/7 3 3/8 1 3/9 26 4/1 1 4/10 14 4/2 10 4/3 64 4/4 3 4/5 3 4/6 1 4/7 3 4/8 1 4/9 13 5/1 2 5/11 1 5/13 13 5/2 2 5/3 5 5/4 33 5/5 3 5/6 4 5/7 2 5/8 2 5/9 5 6/1 1 6/10 3 6/2 3 6/3 3 6/4 3 6/5 23 6/6 2 6/7 3 6/8 1 6/9 5 7/1 1 7/19 5 7/2 5 7/3 11 7/7 1 7/8 1 8/11 1 8/12 1 8/2 2 8/3 1 8/4 3 8/5 2 8/7 14 8/8 1 8/9 2 9/1 1 9/12 5 9/2 2 9/3 1 9/4 1 9/5 1 9/6 1 9/7 3 9/9

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION131
CODON_CHANGE_PLUS_CODON_INSERTION123
CODON_DELETION60
CODON_INSERTION117
FRAME_SHIFT422
FRAME_SHIFT+SPLICE_SITE_REGION46
FRAME_SHIFT+START_LOST4
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION1
FRAME_SHIFT+STOP_GAINED10
FRAME_SHIFT+STOP_LOST4
GENE_FUSION_REVERESE2
MOTIF_DELETED14
MOTIF[MA0003.1:Ap2alpha]43
MOTIF[MA0014.1:Pax5]8
MOTIF[MA0016.1:RXRA]4
MOTIF[MA0024.1:E2F1]12
MOTIF[MA0035.2:Gata1]1
MOTIF[MA0036.1:Gata2]2
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]20
MOTIF[MA0059.1:Cmyc]7
MOTIF[MA0062.1:Gabp]13
MOTIF[MA0062.2:Gabp]52
MOTIF[MA0065.1:PPARG]1
MOTIF[MA0079.1:SP1]17
MOTIF[MA0079.2:SP1]50
MOTIF[MA0080.1:PU1]4
MOTIF[MA0080.2:PU1]6
MOTIF[MA0083.1:Srf]1
MOTIF[MA0093.1:USF1]10
MOTIF[MA0095.1:Yy1]16
MOTIF[MA0099.1:Cfos]2
MOTIF[MA0099.2:AP1]5
MOTIF[MA0114.1:HNF4A]17
MOTIF[MA0138.1:Nrsf]1
MOTIF[MA0138.2:Nrsf]8
MOTIF[MA0139.1:CTCF]117
MOTIF[MA0140.1:Tal1]2
MOTIF[MA0147.1:Cmyc]26
MOTIF[MA0154.1:EBF]6
MOTIF[MA0162.1:Egr1]75
MOTIF[MA0239.1:Pax5]1
NON_SYNONYMOUS_CODING12814
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION256
NON_SYNONYMOUS_START2
PROTEIN_PROTEIN_INTERACTION_LOCUS1
PROTEIN_STRUCTURAL_INTERACTION_LOCUS288
SPLICE_SITE_REGION144
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_DELETION2
SPLICE_SITE_REGION+CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING265
START_GAINED670
START_LOST15
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION1
STOP_GAINED132
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION4
STOP_LOST30
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING12899
SYNONYMOUS_STOP11
TRANSCRIPT14
None0

Type Total Variants
2585
MISSENSE13120
NONSENSE136
SILENT13175
None0

Type Total Variants
HIGH964
LOW14265
MODERATE13505
MODIFIER282
None0

Type Total Variants
DRAGENHardINDEL130
DRAGENHardSNP1379
PASS167393

Quality Value
Min30.01
Average1587.58091899445
Max160266.0

Read Depth Value
Min0
Average92.03725829179051
Max4086

Type Total Variants
None0
41
2|21
24

Chromossome Total Variants
116198
107093
1110031
128899
133060
145702
155699
166927
178707
183053
1911478
211717
204271
212543
223854
39563
47318
57400
610394
78776
86022
96774
X3228
Y195