Name: combined sample_94.variant39
Variants: 168902
Novel Variants: 5997 (Not in latest DbSNP Build)
Type | Total Variants |
---|---|
CODON_CHANGE_PLUS_CODON_DELETION | 131 |
CODON_CHANGE_PLUS_CODON_INSERTION | 123 |
CODON_DELETION | 60 |
CODON_INSERTION | 117 |
FRAME_SHIFT | 422 |
FRAME_SHIFT+SPLICE_SITE_REGION | 46 |
FRAME_SHIFT+START_LOST | 4 |
FRAME_SHIFT+START_LOST+SPLICE_SITE_REGION | 1 |
FRAME_SHIFT+STOP_GAINED | 10 |
FRAME_SHIFT+STOP_LOST | 4 |
GENE_FUSION_REVERESE | 2 |
MOTIF_DELETED | 14 |
MOTIF[MA0003.1:Ap2alpha] | 43 |
MOTIF[MA0014.1:Pax5] | 8 |
MOTIF[MA0016.1:RXRA] | 4 |
MOTIF[MA0024.1:E2F1] | 12 |
MOTIF[MA0035.2:Gata1] | 1 |
MOTIF[MA0036.1:Gata2] | 2 |
MOTIF[MA0047.1:FOXA2] | 1 |
MOTIF[MA0058.1:Max] | 20 |
MOTIF[MA0059.1:Cmyc] | 7 |
MOTIF[MA0062.1:Gabp] | 13 |
MOTIF[MA0062.2:Gabp] | 52 |
MOTIF[MA0065.1:PPARG] | 1 |
MOTIF[MA0079.1:SP1] | 17 |
MOTIF[MA0079.2:SP1] | 50 |
MOTIF[MA0080.1:PU1] | 4 |
MOTIF[MA0080.2:PU1] | 6 |
MOTIF[MA0083.1:Srf] | 1 |
MOTIF[MA0093.1:USF1] | 10 |
MOTIF[MA0095.1:Yy1] | 16 |
MOTIF[MA0099.1:Cfos] | 2 |
MOTIF[MA0099.2:AP1] | 5 |
MOTIF[MA0114.1:HNF4A] | 17 |
MOTIF[MA0138.1:Nrsf] | 1 |
MOTIF[MA0138.2:Nrsf] | 8 |
MOTIF[MA0139.1:CTCF] | 117 |
MOTIF[MA0140.1:Tal1] | 2 |
MOTIF[MA0147.1:Cmyc] | 26 |
MOTIF[MA0154.1:EBF] | 6 |
MOTIF[MA0162.1:Egr1] | 75 |
MOTIF[MA0239.1:Pax5] | 1 |
NON_SYNONYMOUS_CODING | 12814 |
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION | 256 |
NON_SYNONYMOUS_START | 2 |
PROTEIN_PROTEIN_INTERACTION_LOCUS | 1 |
PROTEIN_STRUCTURAL_INTERACTION_LOCUS | 288 |
SPLICE_SITE_REGION | 144 |
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION | 1 |
SPLICE_SITE_REGION+CODON_DELETION | 2 |
SPLICE_SITE_REGION+CODON_INSERTION | 1 |
SPLICE_SITE_REGION+SYNONYMOUS_CODING | 265 |
START_GAINED | 670 |
START_LOST | 15 |
START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION | 1 |
STOP_GAINED | 132 |
STOP_GAINED+CODON_INSERTION | 1 |
STOP_GAINED+SPLICE_SITE_REGION | 4 |
STOP_LOST | 30 |
STOP_LOST+SPLICE_SITE_REGION | 3 |
SYNONYMOUS_CODING | 12899 |
SYNONYMOUS_STOP | 11 |
TRANSCRIPT | 14 |
None | 0 |
Quality | Value |
---|---|
Min | 30.01 |
Average | 1587.58091899445 |
Max | 160266.0 |
Read Depth | Value |
---|---|
Min | 0 |
Average | 92.03725829179051 |
Max | 4086 |