Name: cdh6-52
Variants: 79888
Novel Variants: 4761 (Not in latest DbSNP Build)

Type Total Variants
CODON_CHANGE_PLUS_CODON_DELETION134
CODON_CHANGE_PLUS_CODON_INSERTION123
CODON_DELETION77
CODON_INSERTION115
FRAME_SHIFT441
FRAME_SHIFT+NON_SYNONYMOUS_CODING2
FRAME_SHIFT+SPLICE_SITE_REGION9
FRAME_SHIFT+START_LOST12
FRAME_SHIFT+STOP_GAINED8
FRAME_SHIFT+STOP_LOST3
FRAME_SHIFT+SYNONYMOUS_CODING1
GENE_FUSION_REVERESE3
MOTIF_DELETED11
MOTIF[MA0003.1:Ap2alpha]7
MOTIF[MA0024.1:E2F1]3
MOTIF[MA0047.1:FOXA2]1
MOTIF[MA0058.1:Max]13
MOTIF[MA0059.1:Cmyc]1
MOTIF[MA0062.1:Gabp]1
MOTIF[MA0062.2:Gabp]12
MOTIF[MA0065.2:PPARG]1
MOTIF[MA0079.2:SP1]7
MOTIF[MA0093.1:USF1]2
MOTIF[MA0095.1:Yy1]2
MOTIF[MA0099.2:AP1]1
MOTIF[MA0114.1:HNF4A]2
MOTIF[MA0138.2:Nrsf]2
MOTIF[MA0139.1:CTCF]44
MOTIF[MA0148.1:FOXA1]1
MOTIF[MA0162.1:Egr1]32
NON_SYNONYMOUS_CODING11499
NON_SYNONYMOUS_CODING+CODON_CHANGE_PLUS_CODON_INSERTION1
NON_SYNONYMOUS_CODING+SPLICE_SITE_REGION240
PROTEIN_PROTEIN_INTERACTION_LOCUS8
PROTEIN_STRUCTURAL_INTERACTION_LOCUS243
SPLICE_SITE_REGION28
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_DELETION1
SPLICE_SITE_REGION+CODON_CHANGE_PLUS_CODON_INSERTION1
SPLICE_SITE_REGION+SYNONYMOUS_CODING244
SPLICE_SITE_REGION+SYNONYMOUS_STOP1
START_GAINED223
START_LOST11
START_LOST+CODON_DELETION1
STOP_GAINED120
STOP_GAINED+CODON_INSERTION1
STOP_GAINED+SPLICE_SITE_REGION3
STOP_LOST15
STOP_LOST+SPLICE_SITE_REGION3
SYNONYMOUS_CODING11676
SYNONYMOUS_STOP13
TRANSCRIPT4
None0

Type Total Variants
None0

Type Total Variants
HIGH884
LOW12274
MODERATE12191
MODIFIER58
None0

Type Total Variants
ExcessHet5958
PASS69512
VQSRTrancheINDEL99.00to99.50568
VQSRTrancheINDEL99.50to99.90312
VQSRTrancheINDEL99.90to99.9560
VQSRTrancheINDEL99.95to100.00228
VQSRTrancheSNP99.90to100.00110
VQSRTrancheSNP99.90to100.00+3140

Quality Value
Min10.25
Average494970.186944721
Max5576150.0

Read Depth Value
Min0
Average0.0
Max0

Type Total Variants
None0

Chromossome Total Variants
17930
103336
115085
124265
131441
142622
152591
163605
174611
181395
196121
25690
201934
21978
221643
34637
43111
53357
64077
74418
82712
93322
X1007